DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6654 and klf-3

DIOPT Version :9

Sequence 1:NP_650429.1 Gene:CG6654 / 41831 FlyBaseID:FBgn0038301 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_001022205.1 Gene:klf-3 / 191713 WormBaseID:WBGene00003480 Length:315 Species:Caenorhabditis elegans


Alignment Length:294 Identity:67/294 - (22%)
Similarity:94/294 - (31%) Gaps:116/294 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 QVTTRKSAAKLLTQQENDKHQTPVGSKEEARELEKEQVPQSAKRTSRRRGVVKQDVPATPPSDAE 290
            :|||..:...........|.:||..|.|.:......|:|           .:|.::|      ..
 Worm   136 EVTTVSAVTLHSMTPPTHKIETPPSSPENSFGPLASQLP-----------AIKMEIP------MH 183

  Fly   291 PSPKQHRLGTQRKLSAPRAGTVNGPSTTSGAATTPELKYHCDRCNAGFAVEKSLMIHRRQKGCIN 355
            |.|....|.:.|          :.||:|:.:..:|                      .::|..|.
 Worm   184 PLPHNGELDSTR----------SSPSSTTSSERSP----------------------LQRKSRIE 216

  Fly   356 RNYKCNECEKVFVSPDHLAEHQASHGAHNCPECGIRCDSKEALSKHMVQGHKRNLRNQCNICQKV 420
            .| |.|..:|.||             .|.|...|                           |.|.
 Worm   217 SN-KRNPTDKKFV-------------VHACTYPG---------------------------CFKK 240

  Fly   421 FTMLSTLRDHMRIHTGEKPFVCNICGKSFTQNANLRQHKLRHSETKSFKCELCPHSFVTKAELTS 485
            ::..|.|:.|.|.|:|||||||                          |.:.|...|....|||.
 Worm   241 YSKSSHLKAHERTHSGEKPFVC--------------------------KWQNCSWKFARSDELTR 279

  Fly   486 HARTHTGDKPFECEVCLARFTTSCSLAKHKRKHT 519
            |.|.|||||||.|.:|...|..|..|:.|.::|:
 Worm   280 HMRKHTGDKPFRCSLCDRNFARSDHLSLHMKRHS 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6654NP_650429.1 zf-AD 6..79 CDD:285071
C2H2 Zn finger 331..354 CDD:275368 1/22 (5%)
COG5048 <357..570 CDD:227381 45/163 (28%)
C2H2 Zn finger 360..380 CDD:275368 4/19 (21%)
C2H2 Zn finger 385..406 CDD:275370 2/20 (10%)
C2H2 Zn finger 414..434 CDD:275368 6/19 (32%)
zf-H2C2_2 427..451 CDD:290200 11/23 (48%)
C2H2 Zn finger 442..490 CDD:275368 9/47 (19%)
C2H2 Zn finger 470..487 CDD:275368 5/16 (31%)
zf-H2C2_2 482..507 CDD:290200 15/24 (63%)
C2H2 Zn finger 498..518 CDD:275368 6/19 (32%)
zf-H2C2_2 510..534 CDD:290200 3/10 (30%)
C2H2 Zn finger 526..546 CDD:275368
zf-H2C2_2 539..563 CDD:290200
C2H2 Zn finger 554..574 CDD:275368
C2H2 Zn finger 582..602 CDD:275368
klf-3NP_001022205.1 C2H2 Zn finger 235..254 CDD:275368 7/45 (16%)
C2H2 Zn finger 262..284 CDD:275368 9/47 (19%)
zf-H2C2_2 276..301 CDD:290200 15/24 (63%)
C2H2 Zn finger 292..312 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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