DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6654 and hinf-1

DIOPT Version :9

Sequence 1:NP_650429.1 Gene:CG6654 / 41831 FlyBaseID:FBgn0038301 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_493579.2 Gene:hinf-1 / 173348 WormBaseID:WBGene00009553 Length:541 Species:Caenorhabditis elegans


Alignment Length:276 Identity:74/276 - (26%)
Similarity:101/276 - (36%) Gaps:48/276 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 CDRCNAGFAVEKSLMIHRRQKG---CINRNYK-----C--NECEKVFVSPDHLAEHQASH--GAH 383
            |.:..:...:||...|.....|   |.|.||:     |  .:|...|.|...|.:|...|  |..
 Worm   210 CQQKGSEALIEKEDYIGIESCGFEPCTNINYEGMLLNCQWEDCGMPFNSLTELFDHVGHHIDGVG 274

  Fly   384 NCPE--------------------CGIRCDSKEALSKHMVQGHKRNLRNQCNICQKVFTMLSTLR 428
            :...                    |....|||..|.:| .:.|.......|..|.:.|:....|.
 Worm   275 DVDRIQQNFSNGDKKVVFPCKWTACTQVADSKANLRRH-ARHHSGEKVLACPFCARFFSRRDKLY 338

  Fly   429 DH-------MRIHTGEKPFVCNICGKSFTQNANLRQHKLRHSETKSFKCELCPHSFVTKAELTSH 486
            ||       |:....|.|::|.:|.|.|.....|..|..||  ..|..|.||......:|||..|
 Worm   339 DHCLRRTILMKNPEMEDPYLCKLCQKRFGTEKALCMHVTRH--LVSLTCPLCSLGLGCRAELHRH 401

  Fly   487 ART-HT-GDKPFECEVCLARFTTSCSLAKHKRKHTGERPYACDLCPMRFTALNVLKNHRRTHT-- 547
            ..| |: ..|.|:|:.|...|.|...|.:|...|: :..|:|..||.:|.....|..|.:.|.  
 Worm   402 LMTKHSRRSKDFKCDTCSKLFFTESELNRHAVYHS-DVMYSCKHCPEKFKWKKQLMKHMKEHDEN 465

  Fly   548 -GERPYVCPFCSKTFT 562
             ...||.|..|.:|:|
 Worm   466 FNPSPYTCHLCDRTYT 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6654NP_650429.1 zf-AD 6..79 CDD:285071
C2H2 Zn finger 331..354 CDD:275368 5/25 (20%)
COG5048 <357..570 CDD:227381 67/247 (27%)
C2H2 Zn finger 360..380 CDD:275368 6/21 (29%)
C2H2 Zn finger 385..406 CDD:275370 6/40 (15%)
C2H2 Zn finger 414..434 CDD:275368 7/26 (27%)
zf-H2C2_2 427..451 CDD:290200 10/30 (33%)
C2H2 Zn finger 442..490 CDD:275368 17/48 (35%)
C2H2 Zn finger 470..487 CDD:275368 6/16 (38%)
zf-H2C2_2 482..507 CDD:290200 10/26 (38%)
C2H2 Zn finger 498..518 CDD:275368 6/19 (32%)
zf-H2C2_2 510..534 CDD:290200 7/23 (30%)
C2H2 Zn finger 526..546 CDD:275368 6/19 (32%)
zf-H2C2_2 539..563 CDD:290200 9/27 (33%)
C2H2 Zn finger 554..574 CDD:275368 4/9 (44%)
C2H2 Zn finger 582..602 CDD:275368
hinf-1NP_493579.2 C2H2 Zn finger 299..316 CDD:275368 6/17 (35%)
C2H2 Zn finger 324..344 CDD:275368 6/19 (32%)
C2H2 Zn finger 359..379 CDD:275368 6/19 (32%)
C2H2 Zn finger 385..406 CDD:275368 8/20 (40%)
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
C2H2 Zn finger 442..462 CDD:275368 6/19 (32%)
C2H2 Zn finger 473..494 CDD:275368 4/9 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.