DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn88Eb and Serpinb6b

DIOPT Version :9

Sequence 1:NP_650427.1 Gene:Spn88Eb / 41829 FlyBaseID:FBgn0038299 Length:426 Species:Drosophila melanogaster
Sequence 2:XP_038951899.1 Gene:Serpinb6b / 364705 RGDID:1310452 Length:388 Species:Rattus norvegicus


Alignment Length:408 Identity:121/408 - (29%)
Similarity:191/408 - (46%) Gaps:57/408 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 FSLALMKQIREIYPSGNLFFSPFSTYNALLLAYFSSSEQTERELAQALNLGWALNK--------- 96
            |:..|:|.:.| ..|.|:.|||.|..:.|.:.:..:...|..::.|||:|.....:         
  Rat    11 FAFNLLKTLGE-DSSKNVLFSPLSISSGLAMVFMGAKGTTAHQMIQALSLDKCSGRGSRDVHQGF 74

  Fly    97 QQVLVSYTLAQRQDEFRWRQSPMELSSANRIFVDRTINVSNKFNTL---LYGA-TKELDFKNDPE 157
            |.:|........|         ..|.:|||:|.::|.::...|...   .|.| .:|||||..||
  Rat    75 QSLLAKVNKTGTQ---------YLLKTANRLFGEKTFDILASFKDACRKFYEAEMEELDFKGAPE 130

  Fly   158 TGLKEINDWIADKTHNQ-----------IRDMLSSEEITPHTMLVLANAAYMKGQWLSQFKVEET 211
            ...:.||.|:|.||..|           |.::|||..:..:|.|||.||.|.||.|..||..|:|
  Rat   131 QSRQHINTWVAKKTEGQSISLNWNSQKKITELLSSGSVNANTPLVLVNAIYFKGNWKKQFNKEDT 195

  Fly   212 ALKPFFINEREQEMVYMMHKTGAFKMTIDEGLQSQIIKLPYRTIYKSKETHISTPESKSDISMII 276
            ...||.:.:.|::.|.||.|...||||..|.:.:.|:.|||               ..::::|||
  Rat   196 QEMPFKVTKNEEKPVKMMFKKSTFKMTYVEEISTTILLLPY---------------VGNELNMII 245

  Fly   277 ILPNSNKISLNRVISRLNADSVKKW--FERALPQKIELSLPKFQFEQRLELTPILSLMGVNTMFT 339
            :||:.: |.|..|...:......:|  .::...:::|:.||||:.|:..::..:|..:|:...|.
  Rat   246 MLPDEH-IELRMVEKEITYKKFIEWTSLDKMEEREVEVFLPKFKLEENHDMKDVLHRLGMTDAFE 309

  Fly   340 RN-ATFGDLTADPISLVIDDAQHLAKIKVDEVGSTAAAATILLVSRSSRQPDPTKFNCNHPFVFL 403
            :. |.|..: |....|.:....|.:.::|:|.|:.|||||...|:.....|   .|..||||:|.
  Rat   310 QGMADFSGI-ASKEGLFLSKVIHKSFVEVNEEGTEAAAATAANVTFRCMVP---YFCANHPFLFF 370

  Fly   404 IYDEKVDTILFAGVYSDP 421
            |...:.:.|:|.|.:|.|
  Rat   371 IQHSRTNGIVFCGRFSSP 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn88EbNP_650427.1 SERPIN 37..418 CDD:238101 119/403 (30%)
Serpinb6bXP_038951899.1 serpin 1..388 CDD:422956 120/406 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BBFJ
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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