DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn88Eb and srp-1

DIOPT Version :9

Sequence 1:NP_650427.1 Gene:Spn88Eb / 41829 FlyBaseID:FBgn0038299 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_503315.1 Gene:srp-1 / 178585 WormBaseID:WBGene00005642 Length:366 Species:Caenorhabditis elegans


Alignment Length:391 Identity:104/391 - (26%)
Similarity:173/391 - (44%) Gaps:45/391 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 ERDFSLALMKQIR--EIYPSGNLFFSPFSTYNALLLAYFSSSEQTERELAQALNLGWALNKQQVL 100
            |..|.:.|:..:.  ::.|   ..|||.|...:|.|.:..:...|..::..::..|  ...:|.:
 Worm    12 EAQFGIKLLSDLTSDQLTP---CVFSPVSILLSLALVHLGAKGHTRHDIRNSVVNG--STDEQFI 71

  Fly   101 VSYTLAQRQDEFRWRQSPMELSSANRIFVDRTINVSNKFNTLL---YGA-TKELDFKNDPETGLK 161
            ..::...:.  .....:.:|...|||:||.....:...|...|   |.| |..:|||...|.. |
 Worm    72 EHFSFINKL--LNSSVNDVETLIANRLFVSPEQAIRKAFTDELREHYNAETATIDFKKSQEAA-K 133

  Fly   162 EINDWIADKTHNQIRDMLSSEEITPHTMLVLANAAYMKGQWLSQFKVEETALKPFFINEREQEMV 226
            .:|.:|::.|..:|.||:..:.: .....:|.||.:.:|.|..:|  .|.|...|.|:..|..:|
 Worm   134 IMNQFISESTKGKIPDMIKPDNL-KDVDAILINAIFFQGDWRRKF--GEPAESNFSISATENRLV 195

  Fly   227 YMMHKTGAFKMTIDEGLQSQIIKLPYRTIYKSKETHISTPESKSDISMIIILPNSNKISLNRVIS 291
            .|:.:|..:....|:  :.|:|.:|    :|.|....:           |.|| :.:.:|...:.
 Worm   196 PMLRETRDYFYNKDD--EWQVIGIP----FKDKSAWFA-----------IFLP-TRRFALAENLK 242

  Fly   292 RLNADSVKKWFERALPQKIELSLPKFQFEQRLELTPILSLMGVNTMFTRNATFGDLTADPISLVI 356
            .|||............:.|.|:.|||:.:.::.|...|:..|:..:||..|   ||:.....|.:
 Worm   243 SLNAAKFHNLINNVYQEYIFLTFPKFKMDYKINLKTALAKFGLAELFTEQA---DLSGIGPGLQL 304

  Fly   357 DDAQHLAKIKVDEVGSTAAAAT---ILLVSRSSRQPDPTKFNCNHPFVFLIYDEKVDTILFAGVY 418
            ..|.|.|.|:||:||:.|||||   |...|.||  .:|.....:|||:|.|.  |.::.||.|.|
 Worm   305 ASATHQALIEVDQVGTRAAAATEAKIFFTSASS--DEPLHIRVDHPFLFAII--KDNSPLFLGTY 365

  Fly   419 S 419
            :
 Worm   366 T 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn88EbNP_650427.1 SERPIN 37..418 CDD:238101 103/388 (27%)
srp-1NP_503315.1 serpinL_nematode 11..365 CDD:381047 103/388 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BBFJ
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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