DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42788 and frmpd3

DIOPT Version :9

Sequence 1:NP_731964.2 Gene:CG42788 / 41817 FlyBaseID:FBgn0261859 Length:1560 Species:Drosophila melanogaster
Sequence 2:XP_021328436.1 Gene:frmpd3 / 798302 ZFINID:ZDB-GENE-100316-9 Length:1715 Species:Danio rerio


Alignment Length:1717 Identity:403/1717 - (23%)
Similarity:626/1717 - (36%) Gaps:511/1717 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 PPEPRQVQLQRNASLGFGFVAGSERPVIVRFVTEGGPSIGKLQPGDQILAVNGEDVKDAPRDHVI 318
            |...|:|.:||:.|.||||:|||||||:||.|:..|||.|||.|||||||:|.|.|.|.||:.||
Zfish    32 PGLTREVCIQRHPSHGFGFIAGSERPVVVRSVSADGPSSGKLYPGDQILAINQELVSDVPREKVI 96

  Fly   319 QLVRACESQVNLLVCQPMAHCVLPGRKSTLLSAGKRAKLRSRPSRVRFAESVCVNGAPLFPPSAF 383
            .|||.|...:.|.|.||.     ...||..:||.|:|:||:.|.:|||:|.|.::     .|.:.
Zfish    97 DLVRCCRDSIVLTVLQPQ-----QSPKSAFISAAKKARLRTNPPKVRFSEQVSIS-----DPDST 151

  Fly   384 SLGDICVPPMANVLKVFLENGQTKSFKYDATTTVQDVVSSLLDKLCLCCGELFSLVLEHVKSLKR 448
            .|.|..:..:.|||||||||||.|||.:|:.|||:||:|||.|:|.|...|.|:||||.....:.
Zfish   152 MLKDDSLLLIPNVLKVFLENGQIKSFTFDSRTTVRDVISSLQDRLSLRYIEHFALVLESGGLAQN 216

  Fly   449 NKLTLLDPQESLARIAARPGAHKLRCLFRITFVPISAAELAQRDLHALDYLYLQCCNDVNQERFA 513
            .:|.||...:.|:.:..|.....::|||||.|.|...::|.:||..|.:|||:|..|||.:|||.
Zfish   217 QRLHLLQENQPLSHVVHRTYFQGMKCLFRICFFPKDPSDLLRRDPAAFEYLYIQSRNDVIKERFG 281

  Fly   514 PELQPELALRLAALHMH---QHALANNFAPAKLTVKLVEREFGLERFVPVSLFEGMKRKELRRLI 575
            .:.:.::.|||||||::   ..|..|.    |:::|.||:|:|||.|:|::|...:|.|.:.:.:
Zfish   282 MDWKFDVTLRLAALHIYITVSIARPNQ----KISLKHVEKEWGLEPFLPLALLPTIKEKNVCKTL 342

  Fly   576 SHFLKLNAEMTGSSSKVLTQLQAKLHYLDIIASLPSYGAKCFST--------------------- 619
            |..||.......:.:|| :.||.||.|:.::..||.:|...|.|                     
Zfish   343 SQLLKTYQHPPPAGNKV-SPLQGKLQYMRVLNDLPPFGGFLFHTVGLDEKQSATTLLVGPSHGIS 406

  Fly   620 NQREGVERVLLVSPRFGLSQISSARNSVQPQPISAIEDFTHVV---VNREDDVTCSVSIFMLGDR 681
            ::.:.....|||.||.|:|.:...:|::    .:.:.:|:.|.   :.||......|.:.:|..:
Zfish   407 HEEKQSATTLLVGPRHGISHVIDLKNNL----TTVLAEFSRVAKVQLFREHHGVARVEVVILDAK 467

  Fly   682 AVKFIMEDRDGCEFSLVLGGYYRL-----------LTGNVLNILREREPNDEDNAPGFLSQHTVL 735
            .:..:||..|...|:.::.|||:|           :.|....|..:...:......|    .|||
Zfish   468 PLVLLMEWPDASNFACLISGYYKLFVDPKRTIYCRIPGQPYVIKADCRSSHAQTRSG----ATVL 528

  Fly   736 PAGWSYLLPFHTRAHSVNFLMAP-PYH------PLVQRGQLQQQSSIQAPSSLPYVMDLDLHSVM 793
            ...........:|..:.....:| |.|      .|.::.|| |:..|||.      .:||::..:
Zfish   529 SGSGREERETSSRETTQKTSASPIPQHLGLCHIHLKEQQQL-QEFQIQAE------QELDINENL 586

  Fly   794 ATELLEEAAKDSGLSDSSGSNYCEGRSHLG--SHQLEAKNEQVLRRVQELQHLVQTSEQYLSE-- 854
            .:::...:...|..:..|..:..|   |.|  ...|..:|     |.:.|    :||:::..|  
Zfish   587 ISQVQSRSRTKSDPTLKSTESVAE---HDGPTEESLSFRN-----RAKTL----ETSQKFFCEFC 639

  Fly   855 ----QEQG-----GGGGGVAMLEFDSDCDSLNSSKV-----------SSTEGSQGGTILGPG--- 896
                |.:|     |..|.:.:.:..:.|.|.....|           ...|...||..|.|.   
Zfish   640 KAKLQAEGIIQKTGETGRLILQQCTNACSSREGGAVDLIALPLPGNEEDEEIEDGGGKLQPPTHA 704

  Fly   897 --AIIPPGHPLKHSDS------------------------LTLL-----------AETINHELSG 924
              |..|||.....||.                        :||:           |:.::..|..
Zfish   705 AIAAPPPGFRDNSSDEDDPKKGRKGIKASTAVAQGQDEVPVTLIDNVTTRTVQDHAQELDDALVS 769

  Fly   925 ITQGLNAIPESAPVSTSAPPTPATPKRKPSLCSTSSPRPQRKLNG----FSQLLSDLQALGTDFS 985
            ..|.|.|:..|.........||.|    ..|...::..|:..|:.    .|..|:|:..:.:...
Zfish   770 TLQALEALAASEDYPHHQQQTPQT----TGLIVLAAITPESSLDSGHETNSSELTDVSEMVSAMK 830

  Fly   986 QSESDSESVASPAQSPT--TRRPQMMLL-----QAAGSSA-------GSVAPAKQQLSQRSSFGL 1036
            |.::.:..:|.......  :||...:.:     ||.|..|       ||..|....||:.....:
Zfish   831 QHQNQAYLLAHHINKERLFSRRDFPLTIPGCTTQAIGGGAFSMSQIRGSCPPKPVILSKTLPLKI 895

  Fly  1037 -------HSPDGTHFGAETKDYNLREYLQQLKEISNAASADTDVAARQLSEIYGFEVREDTFIET 1094
                   ||.....:|.                 |:.|:.:.|:      ||            |
Zfish   896 SPNKEISHSDKSAEWGK-----------------SHEANGEKDI------EI------------T 925

  Fly  1095 DTDLI-------------DLRAIPPPQTPDELDSLSLMNAAPPKGF--EGKAEE------LDSFL 1138
            :.||:             :|:|......|.....|.|.|...|...  ||..||      |::..
Zfish   926 EKDLVTECLEESKLQISEELKAPEHGSAPQVNTELLLANEEKPSTITSEGAQEEDSCAKTLETTS 990

  Fly  1139 QQIMVAPPTQKATPAK---------------ELTPEEIMSFIIP---------------PPPNLE 1173
            ..:.|..|..:.|.||               |.|.......::|               |...|:
Zfish   991 IALPVLLPVDRTTSAKICSTNRCQDAENASSETTKPSSSKGLLPTADLFCTCPIRPEPGPQVRLK 1055

  Fly  1174 QQQV--------VAPVETECLYSNSVQAKREFFQSVANGNNGT------VSHSPHIIEYATVERK 1224
            ..||        ::|.:.|.|::..:|..:|.....::.:..|      ..:||  :..|.||:|
Zfish  1056 DPQVQKLVVFHSLSPTDDERLHAQGLQLAKENTAKTSDASLVTPNTLPSTKYSP--VMSAKVEKK 1118

  Fly  1225 SKFSCCPTSKKEEQPGQEELQP-----PPRTPTTEQLS-------PPPARPPKSAE---LLQRYS 1274
            ........:.:.:.|  .|:|.     |.....|..||       .|.|...|.|.   ..||.:
Zfish  1119 EMSEAKAENSQSKSP--VEIQKVAKSLPVNVDPTHMLSCVEKGATIPGAEYKKQANNKGKSQRST 1181

  Fly  1275 PKKQVRIAASPVM------QPQERR---------------ELCPP-----QLPPRGS-------P 1306
            |....|...|...      :..|||               ||..|     :..|:||       |
Zfish  1182 PFLSFRNLISATFPARLRRETDERRAQLQKVRQYELEFLEELLKPKTSQGEFLPQGSSPVPSFTP 1246

  Fly  1307 TLDGSQSSPTNAVSGPKKPPLPPIACRPRPSNGVNSPN----------------SSSPGSAPPAH 1355
            .....::||...|.|..:.......|: |...|:..|:                |.:|.:.|.:.
Zfish  1247 CACQLRTSPVQKVPGISREQRRSCDCK-RMCRGMRLPDTAVGSATEQRGRERAISKTPPAIPKSP 1310

  Fly  1356 YSP----------------------------PIPA-----------TVRLPHLN----------- 1370
            ::|                            .||.           ::..||..           
Zfish  1311 HTPQGELQKNQTLEIKTTRIRSTSLESREPRDIPTSCLPMCTTRTESIGAPHYKKLQRRYSIGEI 1375

  Fly  1371 QANGTLPL-------------------------LPKKPQQLH-----GEKLFIKNG--------- 1396
            :.||:.||                         ||...:.:|     .:|:|...|         
Zfish  1376 ENNGSTPLYAEVKTTKAKSLEKEMERVRATGLRLPTPVEPVHTKDGDAKKIFYIQGEEILQESRE 1440

  Fly  1397 -----------------------------------------------HLIDGEALLAKTDVAMSG 1414
                                                           .::.|..|.::|...:|.
Zfish  1441 GTAEVLGLPSEDTEDREKCCSFCFCYRKCEAADESSEKDELSYSIPLQVLPGMHLDSRTMPVISK 1505

  Fly  1415 LLIKLDQVAAQCSVAQAAGGGTSIDEEKFQRARNELTEQTLALVTASKFLVASMSDMTLITLPEH 1479
            .|..||  |..|.      |...:.||:.|..|.:|  :....:.||...|.|:.|.| .:||:.
Zfish  1506 TLQVLD--AEDCC------GEEEVQEEEPQTQRIDL--RVCGNLEASLARVKSLQDKT-FSLPDG 1559

  Fly  1480 LTSC-------LTAIRRITELAQ--DMTRHTSAPL--QTRNIVLKVHDVASSFRELVGVEIGP-- 1531
            ..:.       |:.:|:.....|  ...|..||.|  ..:.:.::..:..:|.|.:..||..|  
Zfish  1560 FLNAQLDANELLSILRQCANSPQIEGEPRIPSATLAEYKQELAVRFKEFRASCRRVASVEKSPSR 1624

  Fly  1532 -IGAGQLALQAEC-LANVLATLLRSLR 1556
             :.|...:.|..| |......|:|.:|
Zfish  1625 MLSAVTASFQVLCNLTQTFIQLVRGVR 1651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42788NP_731964.2 WW 177..203 CDD:278809
WW 218..246 CDD:238122
PDZ_signaling 257..333 CDD:238492 45/75 (60%)
B41 396..617 CDD:214604 92/223 (41%)
UBQ 396..477 CDD:294102 38/80 (48%)
FERM_M 495..617 CDD:278785 46/124 (37%)
PH-like 613..715 CDD:302622 27/136 (20%)
frmpd3XP_021328436.1 PDZ_signaling 35..111 CDD:238492 45/75 (60%)
B41 164..383 CDD:214604 92/223 (41%)
PH-like 379..500 CDD:327399 25/124 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595606
Domainoid 1 1.000 129 1.000 Domainoid score I5204
eggNOG 1 0.900 - - E1_KOG3552
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm24527
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4089
SonicParanoid 1 1.000 - - X1331
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
98.730

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