DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42788 and frmpd4

DIOPT Version :9

Sequence 1:NP_731964.2 Gene:CG42788 / 41817 FlyBaseID:FBgn0261859 Length:1560 Species:Drosophila melanogaster
Sequence 2:XP_021334733.1 Gene:frmpd4 / 403129 ZFINID:ZDB-GENE-121004-1 Length:1208 Species:Danio rerio


Alignment Length:1138 Identity:324/1138 - (28%)
Similarity:499/1138 - (43%) Gaps:290/1138 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 HMTQS--------AGWLPACEDWSKHEELSYGWERAIDSKGRSYYINHLNKTTTYEAPECIRWDE 252
            |.|:|        .||.||       :....|||.::..:.|..|:|||:::::.|.   :|.|.
Zfish    15 HRTKSPCCPPPAPGGWAPA-------QGPPNGWEMSLSREARDCYVNHLSQSSSLEE---VRVDV 69

  Fly   253 H---PPEPRQVQLQRNASLGFGFVAGSERPVIVRFVTEGGPSIGKLQPGDQILAVNGEDVKDAPR 314
            .   ||.||:|:::|:..||||||||||:||:||.||.||||.|||.|||:|:.:|.|.|..|||
Zfish    70 EKFVPPAPRKVEMRRDPVLGFGFVAGSEKPVVVRSVTPGGPSEGKLIPGDEIVMINEEPVSSAPR 134

  Fly   315 DHVIQLVRACESQVNLLVCQPMAHCVLPGRKSTLLSAGKRAKLRSRPSRVRFAESVCVNGAPLFP 379
            :.||.|||:|:..:.|.|.||     .|..||..:||.|:|||:|.|.:|||||.|.:||.   .
Zfish   135 ERVIDLVRSCKESIILTVVQP-----YPSPKSAFISAAKKAKLKSNPVKVRFAEEVIINGQ---V 191

  Fly   380 PSAFSLGDICVPPMANVLKVFLENGQTKSFKYDATTTVQDVVSSLLDKLCLCCGELFSLVLEHVK 444
            |.  |:.|..:..|.|||||:||||||||||:|..|:::||:.:|.:||.:...|.|||:|||..
Zfish   192 PE--SVKDNSLLFMPNVLKVYLENGQTKSFKFDCNTSIKDVILTLQEKLSIKSIEHFSLMLEHKV 254

  Fly   445 SLKRNKLTLLDPQESLARIAARPGAHKLRCLFRITFVPISAAELAQRDLHALDYLYLQCCNDVNQ 509
            .....||.||..||.|.::..|||:||::|.|||:|:|....:|.:||..|.||||:|.|.||.|
Zfish   255 EGSATKLMLLHEQEMLTQVTQRPGSHKMKCYFRISFLPKDPVDLLRRDAAAFDYLYVQSCKDVVQ 319

  Fly   510 ERFAPELQPELALRLAALHMHQHALANNFAPAKLTVKLVEREFGLERFVPVSLFEGMKRKELRRL 574
            |||..||:.:.|||||||.|:...|:.... .|:::|.:|:|:||.:|:|.::...||.|.:::.
Zfish   320 ERFGSELKYDTALRLAALQMYILTLSTKHT-QKVSLKYIEKEWGLAQFLPPAVLSSMKEKNIKKA 383

  Fly   575 ISHFLKLNAEMTGSSSKVLTQLQAKLHYLDIIASLPSYGAKCFSTNQREG---VERVLLVSPRFG 636
            ::|.||.|..:.....| ||.||||:|||..::.|..||.:.|.:...:|   .|..|||.||:|
Zfish   384 LTHILKTNQNLVPPGKK-LTALQAKVHYLKYLSDLRLYGGRVFKSTLVQGEKHTEVTLLVGPRYG 447

  Fly   637 LSQISSARNSVQPQPISAIEDFTHVVVNR-----EDDVTCSVSIFMLGDRAVKFIMEDRDGCEFS 696
            :|.:.:.:.::    ::.:.||:|  |||     ||:....|.:.:|..:.:..|||..|....:
Zfish   448 ISHVINTKTNL----VALLADFSH--VNRIEMYTEDERNVRVELHVLDVKPITLIMESSDAMNLA 506

  Fly   697 LVLGGYYRLLTG---NVLNILREREPNDEDNAPGFLSQHTVLPAGWSYLLPFHTRAHSVNFLMAP 758
            .:..||||||..   ::.|:.........|..    .:|......|:|     ......|    .
Zfish   507 CLTAGYYRLLVDSRRSIFNMANNSNTAGHDTR----IKHNYQAIDWNY-----GTCGGCN----E 558

  Fly   759 PYHPLVQRGQLQQQSSIQAPSSLPYVMDLDLHSVMATELLEEAAKDSGLSDSSGSNYCEGRSH-- 821
            |:......|:.:...|   ||.:.     ..|.:...|..|..::.|.:......|..:|:..  
Zfish   559 PHPEYAVCGRRECDIS---PSEIH-----QAHHMHGDEKAERQSRGSHMHAQPYFNIPKGKPQES 615

  Fly   822 ---------LGSHQLEAKNEQVL---RRVQELQHLVQTSEQYLSEQEQGGGGGGVAMLEFDSDCD 874
                     .|...|::.|.|.|   |.::::..::: ..:||..|::              |..
Zfish   616 PRSAKVSFIFGDPPLDSVNPQNLGYHRLMEDIPEVLE-EHRYLYAQQK--------------DYK 665

  Fly   875 SLNSSKVSSTEGSQGGTILGPGAIIPPGHPLKHSDSLTLLAETINHELSGITQGLNAIPESAPVS 939
            .|.:|  ...:|.|.||.:..|                      :.::.|.|:|:.         
Zfish   666 PLEAS--LEVDGFQYGTHMVYG----------------------DAKIFGTTEGIE--------- 697

  Fly   940 TSAPPTPATPKRKPSLCSTSSPRPQRKLNGFSQLLSDL-QALGTDFSQSESDSESVASPAQSPTT 1003
                                           ..||.|: .|..||.::.:.|.          :.
Zfish   698 -------------------------------EPLLHDICYAETTDDAEDDDDI----------SC 721

  Fly  1004 RRPQMMLLQAAGSSAGSVAPAKQQLSQRSSFGLHSPDGTHFGAETKDYNLREYLQQLKEISNAAS 1068
            ....||::......|.|:                                         :|.:.|
Zfish   722 EEDMMMMMGEMKDKANSL-----------------------------------------LSLSES 745

  Fly  1069 ADTDVAARQLSEIYGFEVREDTFIETDTDLIDLRAIPPP-------QTPDELDSLSLMNAAPPKG 1126
            :|                          |:|||.::|||       .:.|.|:||:|..||||.|
Zfish   746 SD--------------------------DIIDLTSLPPPPEGDYEEDSDDLLESLNLAIAAPPPG 784

  Fly  1127 FEGKAEELD-------------SFLQQIMVAPPTQKATPAKELTPEEIMSFIIPPPPNLEQQQVV 1178
            |...::|.|             |.:..:    |||.|..::|:..:.::|       .|:..:.:
Zfish   785 FRDSSDEDDHHDRKMAKNDIPVSLIDSV----PTQVAGGSEEVFNDAVVS-------TLQALEAL 838

  Fly  1179 APVETECL----YSNSVQAKREFF--QSVANGNNGTVSHSPHIIEYATVERKSKFSC---CPTSK 1234
            |..|.:..    .|:.|:..|.|.  .|..:||....|......|.|..::.|:.|.   ..|::
Zfish   839 AASEDQSHPQSDNSSGVEISRSFSPESSSDSGNETNSSEMTESSELAAAQKLSENSLKMFVATAE 903

  Fly  1235 KEEQPGQEELQPPPRTPTTEQLSPPPARPPKSA 1267
            ..:...:||        |..:|:|....|..||
Zfish   904 GYQTLAEEE--------TEFRLAPSLDDPQSSA 928

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42788NP_731964.2 WW 177..203 CDD:278809 3/14 (21%)
WW 218..246 CDD:238122 9/27 (33%)
PDZ_signaling 257..333 CDD:238492 44/75 (59%)
B41 396..617 CDD:214604 101/220 (46%)
UBQ 396..477 CDD:294102 41/80 (51%)
FERM_M 495..617 CDD:278785 52/121 (43%)
PH-like 613..715 CDD:302622 32/112 (29%)
frmpd4XP_021334733.1 PDZ_signaling 77..153 CDD:238492 44/75 (59%)
B41 206..425 CDD:214604 101/220 (46%)
FERM_C_FRMPD1_FRMPD3_FRMPD4 421..525 CDD:270004 31/109 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595604
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3552
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
32.790

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