DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42788 and Frmpd1

DIOPT Version :9

Sequence 1:NP_731964.2 Gene:CG42788 / 41817 FlyBaseID:FBgn0261859 Length:1560 Species:Drosophila melanogaster
Sequence 2:NP_001101407.2 Gene:Frmpd1 / 313244 RGDID:1305229 Length:1549 Species:Rattus norvegicus


Alignment Length:1276 Identity:323/1276 - (25%)
Similarity:505/1276 - (39%) Gaps:348/1276 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 MTQSAGWLPACEDWSKHEELSYGW-ERAIDSKGRSYYINHLNKTTTYEAPECIRWDEHPPEPRQ- 259
            |.:..|.|.......:.|::...| .|:.||..|:       |....:.|        |..|.| 
  Rat     1 MEELEGGLSQTRKAHRIEQMVARWLRRSRDSSARA-------KVAAADGP--------PGNPAQA 50

  Fly   260 -------VQLQRNASL-GFGFVAGSERPVIVRFVTEGGPSIGKLQPGDQILAVNGEDVKDAPRDH 316
                   |.|.::..| .:||......|:.|..||.||.:.|||.||||||.:|.|..:|...:.
  Rat    51 LTAVQHTVTLDKDVLLQNYGFHISETLPLTVVAVTAGGSAHGKLFPGDQILQMNKELAEDLSCER 115

  Fly   317 VIQLVRACESQVNLLVCQPMAHCVLPGRKSTLLSAGKRAKLRSRPSRVRFAESVCVNGAPLFPPS 381
            .:.::|..|..:::.|    ..|.....||:.|:..|||:|::.|.:|.|||.|.|:|       
  Rat   116 AVDILRETEDALSITV----VRCTSGVPKSSFLTEEKRARLKTNPVKVHFAEEVLVSG------- 169

  Fly   382 AFSLGD--ICVPPMANVLKVFLENGQTKSFKYDATTTVQDVVSSLLDKLCLCCGELFSLVLEHVK 444
             .|.|:  :|:|   |||||:|||||||:||::|.|||:|::.::.:||.:...|.|:|.||...
  Rat   170 -HSQGNSLLCMP---NVLKVYLENGQTKAFKFEANTTVKDIILTVKEKLSIRSIEYFALALEEQY 230

  Fly   445 SLKRNKLTLLDPQESLARIAARPGAHKLRCLFRITFVPISAAELAQRDLHALDYLYLQCCNDVNQ 509
            |:.|  |.||..:|.:.::..|..:...|||||:.|||....:|.:.|..|.:|||||.|:||.|
  Rat   231 SISR--LHLLHEEELIQQVVEREESQDSRCLFRVCFVPKDPLDLLKEDPVAFEYLYLQSCSDVLQ 293

  Fly   510 ERFAPELQPELALRLAALHMHQ--HALANNFAPAKLTVKLVEREFGLERFVPVSLFEGMKRKELR 572
            ||||.|::...||||||||:.:  :|.|.   |.|:::|.:|:::|:|.|:..:|...||.|:::
  Rat   294 ERFAVEMKCNSALRLAALHIQERIYACAQ---PQKISLKYIEKDWGIENFISPTLLRNMKGKDIK 355

  Fly   573 RLISHFLKLNAEMTGSSSK-VLTQLQAKLHYLDIIASLPSYGAKCFST----NQREGVERVLLVS 632
            :.||..:|.|..:.....| :::..|.:|:||.|:..|.:||.|.|:.    ..||.. ..|||.
  Rat   356 KAISFHMKRNQNLLEPRQKQLISAAQLRLNYLQILGELKTYGGKIFNATLMLQDRESY-IALLVG 419

  Fly   633 PRFGLSQISSARNSVQPQPISAIEDF---THVVVNREDDVTCSVSIFMLGDRAVKFIMEDRDGCE 694
            .::|:|||.:::.::    :|.:.:|   :.|.:..|.:....|.|::...:.:..::|.....:
  Rat   420 AKYGISQIINSKLNI----MSTLAEFANISRVELTEESEKVSVVKIYLQDVKVLTLLLESSSAKD 480

  Fly   695 FSLVLGGYYRLLTGNVLNILREREPNDEDNAPGFLSQHTVLPAGWSYLLPFHTRAHSVNFLMAPP 759
            .:.::.|||||..             |..| |.||         ||                   
  Rat   481 LTCLIAGYYRLFV-------------DPAN-PVFL---------WS------------------- 503

  Fly   760 YHPLVQRGQLQQQSSIQAPSSLPYVMDLDLHSVMATELLEEAAKDSGLSDSSGSNYCEGRSHLGS 824
                   |..||...:.|                     ||..:....|||..|:..:       
  Rat   504 -------GNRQQTHRVSA---------------------EEGYESRACSDSEESSEVD------- 533

  Fly   825 HQLEAKNEQVLRRVQELQHLVQTSEQYLSEQEQGGGGGGVAMLEFDSDCDSLNSSKVSSTEGSQG 889
            ..||..:::.|.::...:..|:      .||..|............|.|.:  ||...|.|.   
  Rat   534 CVLEPLSDRCLVKLSLCRPFVR------EEQRPGDSPTPEVTRRGPSTCGA--SSMTDSAES--- 587

  Fly   890 GTILGPGAIIPPGHPLKHSDSLTLLAETINHELSGITQGLNAIPESAPVSTSAPPTPATPKRKPS 954
                            :.|||..  .|:.....||.::.::|:.|....:.|:..|        |
  Rat   588 ----------------EASDSAN--TESRGCRTSGSSESMDALEEDDLDACSSSGT--------S 626

  Fly   955 LCSTSSPRPQRKLNGFSQLLSDLQALGTDFSQSESDSESVASP-------AQSPTTRRPQMMLLQ 1012
            ......|       |||:   ||     |.:..|.:|....|.       ||:.|:|..::...|
  Rat   627 FFHFGPP-------GFSK---DL-----DTNSQEENSRVETSGFLCLLDLAQNATSRCQKIEGPQ 676

  Fly  1013 AAGSSAGSVAPAKQQLSQRSSFGLHSPDGTHFGAETKDYNLREYLQQLKEISNAASADTDVAARQ 1077
            :..|.|.|..|       ..|.|...| ..:.|:.|..|:|...:.....:|::.|..|  .:||
  Rat   677 SLASEACSWGP-------ELSMGRLDP-RLYEGSRTDYYSLCSSVSPGSHLSDSGSEST--TSRQ 731

  Fly  1078 LSEIYG-----------FEVREDTFIETDTDLIDLRAIPPPQTPDELDSLSLMNAA----PPKGF 1127
                 |           .|.:..:.:||    :.|.|:|.....|........:||    ||...
  Rat   732 -----GAAPPPWCPQDWMETQSGSMLET----LALPALPTLALEDGSSDEEYYDAADKLTPPDTL 787

  Fly  1128 EG-KAEELDSFLQQI---------MVAPPTQKATPAKE-------LTPEEIMSFI---------I 1166
            .| :|.:|.:...|.         .:.|..:...|:::       .:|.:..||:         .
  Rat   788 SGPRAADLSAMRLQSHSRTRGSEESLHPDPEGGEPSRQGGVKKYAKSPRKRRSFLQTDHTSQVSF 852

  Fly  1167 PPPPNLEQQQVVAPVETECLYSNSVQAKREFFQSVANGNNGTVS------HSPHIIEYATV---- 1221
            |..|:..|:.    ::..|.|.      ||.:.|: ...:.|||      ..|.::|...:    
  Rat   853 PMEPSASQEN----MDDVCYYD------REPYLSL-TAPSPTVSSLQDMKSEPGLLETKALGLLA 906

  Fly  1222 ---ERKSKFSCCPTSKKEEQPGQEELQPPPRTPTTEQLSPPPARPPKSAELLQRYSPKKQVRIAA 1283
               |.|||           .|....::..|.|..|:  |...:|....:.:..|..|.....:.|
  Rat   907 SLRETKSK-----------NPASRIMEMEPETMETK--SVIDSRVSSISAIRLRIDPGNTENLEA 958

  Fly  1284 SPVMQPQERRELCPPQLPPRGSPTLDGSQSS-PTNAVSGPKKPPLPPIACRPRPSNGVNSPNSSS 1347
            ||                  .:.|.|||.:| |.|                |.|||    |.|||
  Rat   959 SP------------------SAVTTDGSSASIPHN----------------PHPSN----PGSSS 985

  Fly  1348 PGSA---PPAHYSPPIPATVRLPHLNQANGTLPL-LPKKPQ 1384
            |.:|   |....||.          ..|.||.|. |..:||
  Rat   986 PQAAQVRPLQSISPG----------QDAGGTTPKGLTAEPQ 1016

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42788NP_731964.2 WW 177..203 CDD:278809 1/5 (20%)
WW 218..246 CDD:238122 6/28 (21%)
PDZ_signaling 257..333 CDD:238492 27/84 (32%)
B41 396..617 CDD:214604 92/223 (41%)
UBQ 396..477 CDD:294102 35/80 (44%)
FERM_M 495..617 CDD:278785 50/124 (40%)
PH-like 613..715 CDD:302622 24/108 (22%)
Frmpd1NP_001101407.2 PDZ_signaling 56..132 CDD:238492 26/79 (33%)
FERM_F1_FRMPD1 179..268 CDD:340688 42/93 (45%)
B41 182..401 CDD:214604 92/223 (41%)
FERM_C_FRMPD1_FRMPD3_FRMPD4 397..501 CDD:270004 27/122 (22%)
DUF4764 <1125..1257 CDD:374255
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353481
Domainoid 1 1.000 108 1.000 Domainoid score I6308
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1331
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.840

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