DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42788 and Frmpd4

DIOPT Version :9

Sequence 1:NP_731964.2 Gene:CG42788 / 41817 FlyBaseID:FBgn0261859 Length:1560 Species:Drosophila melanogaster
Sequence 2:XP_038955575.1 Gene:Frmpd4 / 302656 RGDID:1566031 Length:1777 Species:Rattus norvegicus


Alignment Length:1536 Identity:394/1536 - (25%)
Similarity:610/1536 - (39%) Gaps:440/1536 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 ENW---PEIDGHLEAIQEKLKPGWSVHVGKEGRLYYCNHMTQSAGWLPACEDWSKHEELSYGWER 222
            |||   |...|..:|::             :.|.:.|.|.|:|:||.|....|..::...||||.
  Rat     8 ENWSTFPIPWGFGKAVE-------------DNREHVCRHRTKSSGWPPPSGTWGLNQVPPYGWEM 59

  Fly   223 AIDSKGRSYYINHLNKTTTYEAPECIRWDE---HPPEPRQVQLQRNASLGFGFVAGSERPVIVRF 284
            ..:..||.|:|||:.:...::.|   |:|.   .||.||:|:::|:..||||||||||:||:||.
  Rat    60 MTNRDGRDYFINHMTQAIPFDDP---RFDSCQIIPPAPRKVEMRRDPVLGFGFVAGSEKPVVVRS 121

  Fly   285 VTEGGPSIGKLQPGDQILAVNGEDVKDAPRDHVIQLVRACESQVNLLVCQPMAHCVLPGRKSTLL 349
            ||.||||.|||.|||||:.:|.|.|..|||:.||.|||:|:..:...|.||     .|..||..:
  Rat   122 VTPGGPSEGKLIPGDQIVMINDEPVSAAPRERVIDLVRSCKESILFTVIQP-----YPSPKSAFI 181

  Fly   350 SAGKRAKLRSRPSRVRFAESVCVNGAPLFPPSAFSLGDICVPPMANVLKVFLENGQTKSFKYDAT 414
            ||.|:|:|:|.|.:|||:|.|.:||     ..:.::.|..:..|.|||||:|||||||||::|.:
  Rat   182 SAAKKARLKSNPVKVRFSEEVIING-----QVSETVKDNSLLFMPNVLKVYLENGQTKSFRFDCS 241

  Fly   415 TTVQDVVSSLLDKLCLCCGELFSLVLEHVKSLKRNKLTLLDPQESLARIAARPGAHKLRCLFRIT 479
            |:::||:.:|.:||.:...|.|||:||........||.||..||:|.::..||.:||:||||||:
  Rat   242 TSIKDVILTLQEKLSIKGIEHFSLMLEQRTEGAGTKLLLLHEQETLTQVTQRPSSHKMRCLFRIS 306

  Fly   480 FVPISAAELAQRDLHALDYLYLQCCNDVNQERFAPELQPELALRLAALHMHQHALANNFAPAKLT 544
            |||....:|.:||..|.:|||:|.||||.||||.|||:.::|||||||.|: .|........|::
  Rat   307 FVPKDPIDLLRRDPVAFEYLYVQSCNDVVQERFGPELKYDIALRLAALQMY-IATVTTKQTQKIS 370

  Fly   545 VKLVEREFGLERFVPVSLFEGMKRKELRRLISHFLKLNAEMTGSSSKVLTQLQAKLHYLDIIASL 609
            :|.:|:|:|||.|:|.::.:.||.|.:::.:||.:|.|..:.....| |:.||||:|||..::.|
  Rat   371 LKYIEKEWGLETFLPSAVLQSMKEKNIKKALSHLVKANQNLVPPGKK-LSALQAKVHYLKFLSDL 434

  Fly   610 PSYGAKCFSTNQREGVER---VLLVSPRFGLSQISSARNSVQPQPISAIEDFTHVVVNR-----E 666
            ..||.:.|.....:..:|   .|||.||:|:|.:.:.:.::    ::.:.||:|  |||     |
  Rat   435 RLYGGRVFKATLVQAEKRSEVTLLVGPRYGISHVINTKTNL----VALLADFSH--VNRIEMFTE 493

  Fly   667 DDVTCSVSIFMLGDRAVKFIMEDRDGCEFSLVLGGYYRLLTG---NVLNILREREPNDEDNAPGF 728
            ::....|.:.:|..:.:..:||..|....:.:..||||||..   ::.|:..::....:|.....
  Rat   494 EESLVRVELHVLDVKPITLLMESSDAMNLACLTAGYYRLLVDSRRSIFNMANKKNAGTQDTGTEN 558

  Fly   729 LSQHTVLPAGW-------------------SYLLPFHTRAHSVNFLMAPPYH------------- 761
            ..:|.:|...|                   :|:..........:..:.|..|             
  Rat   559 KGKHNLLGPDWNCMPQMTTFIGEGEQEAQITYIDSKQKAVEMTDSTLCPKEHRHLYIDNTYSSDE 623

  Fly   762 ---PLVQRG---------QLQQQS--SIQAPSSLPYVMDLDLHSVMATELLEEAAKDSGLSDSSG 812
               ||.|.|         .|.|:|  ::..|.:|....: .......:.:..:.|.|.|:|..: 
  Rat   624 LSQPLTQPGDAPCEADYRSLAQRSLLTLSGPDTLKKAQE-SPRGAKVSFIFGDLALDDGMSPPT- 686

  Fly   813 SNYCEGRSHLGSHQLEAKNEQVLRRVQELQHLVQTSEQYLSEQEQGGGGGGVAMLEFDSDCDSL- 876
                     ||..::..:|.::|.:.:.|         |:|      ....:..|:...|.||: 
  Rat   687 ---------LGYERMLDENPEMLEKQRNL---------YIS------SANDMKNLDLTPDTDSIQ 727

  Fly   877 --------NSSKVSSTEGSQGGTILGPGAIIPPGHPLKH-------------SDSLT----LLAE 916
                    |...|.:.|..:|           ...||.|             .|.::    |:..
  Rat   728 FVANSVYANIGDVKNFEAPEG-----------IEEPLLHDICYAENTDDAEDEDEVSCEEDLVVS 781

  Fly   917 TINH----ELSGITQGLNAIPESAPVSTSAPPTPATPKRKPSL-----CSTSSPRPQRKLNGF-- 970
            .||.    :|||.:..:..:       |:.||..........|     .:.::|.|     ||  
  Rat   782 EINQPAILDLSGSSDDIIDL-------TTLPPPEGDDNEDDFLLRSLNMAIAAPPP-----GFRD 834

  Fly   971 SQLLSDLQALGTDFSQSESDSESVASPAQSPTTRRPQMMLLQAAGSSAG---------------- 1019
            |....|.|:..|.|.:::....|:.: .:.|.:      |:.|..:||.                
  Rat   835 SSDEEDTQSQATSFHENKEQGSSLQN-EEIPVS------LIDAVPTSAEGKCEKGLDPTVVSTLE 892

  Fly  1020 --SVAPAKQQLSQRSSFGL---HSPD-GTHFGAETKDYNLREYLQQLKEISNAASADTDVAARQL 1078
              .....:||.|:.|...:   :||: .:..|.||....:.|.    .|::.|......::...|
  Rat   893 ALEALSEEQQKSENSGVAILRAYSPESSSDSGNETNSSEMTEG----SELAAAQKQSESLSRMFL 953

  Fly  1079 SEIYGFEVREDTFIETDTDLIDLRAIPPPQTPDELDSLSLMNAAPPKGFEGKAEELDSFLQQIMV 1143
            :...|:.    ...|..|:      .|..:||    |:.|    |||...|.|....:.|     
  Rat   954 ATHEGYH----PLAEEQTE------FPTSKTP----SVGL----PPKSSHGLAARPATDL----- 995

  Fly  1144 APPTQKATPAKELTPEEIMSFIIPPPPNLEQQQV-----------------------VAPVETEC 1185
             ||  |..|:|::...:.|..   .|..:|.:.|                       :|..|.:|
  Rat   996 -PP--KVVPSKQILHSDHMEM---EPETMETKSVTDYFSKLHMGSVAYSCTSKRKSKLAEGEGKC 1054

  Fly  1186 LYSNSVQAKREFFQSVA------NGNNGTVS--HSPH-------------------------IIE 1217
            ..|.:|..|::....:|      .|..||||  .:||                         ::|
  Rat  1055 PLSGNVPGKKQQGTKIAETEEDTKGKVGTVSSRDNPHLSTFNLERTAFRKDSQRWYVASDGGVVE 1119

  Fly  1218 YATVERKS--KFSCCPTSKKEEQPGQE-------------------------------ELQPPPR 1249
            .:.||..:  .|...|.....|..|:|                               :|..|..
  Rat  1120 KSGVEAPAMKAFPRGPGLGNREAEGKEDGTMEGEADDASGLGQGERFLSDMACVASAKDLDNPED 1184

  Fly  1250 T--PTTEQLSPPPARPPKSAELLQRYSPKKQVRI----------------------------AAS 1284
            |  ||.:..:..|......|.|...:..|:...:                            .|:
  Rat  1185 TDSPTCDHATKLPEAEDNVARLCDYHLAKRMSSLQSEGHFSLQSSQGSSVDTGCGPGSSSSACAT 1249

  Fly  1285 PVMQPQERRELCP-------PQLPPRGSPTLDGSQSSPTNAVSG------------PKKPPLPPI 1330
            ||..|     |||       |....:|     ||..||...|:|            |:...:.|.
  Rat  1250 PVESP-----LCPSMGKHLIPDASGKG-----GSYISPEERVAGHPNHGATFKELHPQTEGMCPR 1304

  Fly  1331 ACRPRPSNGVNS-------------------------PNSSSPGSAPPAHYSPPIPATVRLP--- 1367
            ...|.....:|:                         |.....|..|.|....|....:.||   
  Rat  1305 MTVPALHTAINADPLFGTLRDGCHRLPKIKETTALTEPGKERQGGMPSAWSPHPEADPILLPSNI 1369

  Fly  1368 HL-----------------NQANGTLPLLPKKPQQLHGEKL 1391
            ||                 |||.|  ..:..:|..|.|..|
  Rat  1370 HLESKVPSPNQDPNDFSQGNQAFG--EAVSWRPADLRGGSL 1408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42788NP_731964.2 WW 177..203 CDD:278809 5/25 (20%)
WW 218..246 CDD:238122 10/27 (37%)
PDZ_signaling 257..333 CDD:238492 44/75 (59%)
B41 396..617 CDD:214604 102/220 (46%)
UBQ 396..477 CDD:294102 40/80 (50%)
FERM_M 495..617 CDD:278785 53/121 (44%)
PH-like 613..715 CDD:302622 29/112 (26%)
Frmpd4XP_038955575.1 WW 54..83 CDD:238122 11/31 (35%)
PDZ_signaling 94..170 CDD:238492 44/75 (59%)
FERM_F1_FRMPD4 219..312 CDD:340690 48/92 (52%)
B41 223..442 CDD:214604 102/220 (46%)
FERM_C_FRMPD1_FRMPD3_FRMPD4 438..542 CDD:270004 28/109 (26%)
LGNbd_FRMPD4 991..1039 CDD:409274 10/58 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353480
Domainoid 1 1.000 124 1.000 Domainoid score I5419
eggNOG 1 0.900 - - E1_KOG3552
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007172
OrthoInspector 1 1.000 - - oto96947
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1331
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.700

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