DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42788 and frmpd1

DIOPT Version :9

Sequence 1:NP_731964.2 Gene:CG42788 / 41817 FlyBaseID:FBgn0261859 Length:1560 Species:Drosophila melanogaster
Sequence 2:XP_005170993.1 Gene:frmpd1 / 101886200 -ID:- Length:1757 Species:Danio rerio


Alignment Length:1532 Identity:367/1532 - (23%)
Similarity:586/1532 - (38%) Gaps:463/1532 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   261 QLQRNASL-------------GFGFVAGSERPVIVRFVTEGGPSIGKLQPGDQILAVNGEDVKDA 312
            |.||:.:|             ..||...:..|..|..||||||:.|||.||||:..:|...|:|.
Zfish    49 QEQRSCTLRVTVKIPLDSTLNSHGFTVSTHTPPQVLDVTEGGPADGKLVPGDQLFKINNITVEDL 113

  Fly   313 PRDHVIQLVRACESQVNLLVCQPMAHCVLPGRKSTLLSAGKRAKLRSRPSRVRFAESVCVNG--- 374
            ..:....::|.|::.|.|.|.:...     |.||:.::..|||||:|.|.:|||||.|.|||   
Zfish   114 STEQAADIIRECQNTVILTVLRNTL-----GPKSSFITPEKRAKLKSNPVKVRFAEEVVVNGHSQ 173

  Fly   375 --APLFPPSAFSLGDICVPPMANVLKVFLENGQTKSFKYDATTTVQDVVSSLLDKLCLCCGELFS 437
              :.||.|              |||||:|||||||:||:::.|||:|:|.:|.:||.:...|.||
Zfish   174 GNSLLFLP--------------NVLKVYLENGQTKAFKFESKTTVKDIVMTLKEKLSITRIEHFS 224

  Fly   438 LVLEHVKSLKRNKLTLLDPQESLARIAARPGAHKLRCLFRITFVPISAAELAQRDLHALDYLYLQ 502
            ||||...|:  :||.||..:|.:.::..:...|..|||||:.|:|.....:...|....:|||||
Zfish   225 LVLEQQYSI--SKLYLLHEEEIIQKVVEKKETHDYRCLFRVCFLPRDFKSMLTEDPVGFEYLYLQ 287

  Fly   503 CCNDVNQERFAPELQPELALRLAALHMHQHALANNFAPAKLTVKLVEREFGLERFVPVSLFEGMK 567
            ..:||.|||||.|::...||||||||: |..||::....|..:|.:.:|:|:|.||..:|...|:
Zfish   288 SVSDVLQERFAVEMKCNTALRLAALHV-QEKLASSGQSLKTPLKAIMKEWGIESFVSHTLLRNMR 351

  Fly   568 RKELRRLISHFLK--LNAEMTGSSSKVLTQLQAKLHYLDIIASLPSYGAKCFST----NQREGVE 626
            .|:|::.||:.:|  |:.|   ...|:::..||:|:|::.::.|.|||.|.||.    ..||...
Zfish   352 EKDLKKAISYHMKKILSQE---PKQKMISVDQARLNYMNEMSELKSYGGKAFSATMMLQDRESTV 413

  Fly   627 RVLLVSPRFGLSQISSARNSVQPQPISAIEDF---THVVVNREDDVTCSVSIFMLGDRAVKFIME 688
            . |||..::|:||:.:.:.|:    ::.:.:|   |.|.:..|.|....|.|::...:.:..:||
Zfish   414 S-LLVGAKYGVSQVINHKLSI----MTTLTEFSCITRVELLPESDRVSLVKIYLQDIKPITLLME 473

  Fly   689 DRDGCEFSLVLGGYYRLLTGNVLNILREREPNDEDNAPGFLSQHTVLPAGWSYLLPFHTRAHSVN 753
            .....:.|.::.||.:||.          :|           |..|.|  ||   | ::::|.::
Zfish   474 SVAAKDLSCLVAGYCKLLV----------DP-----------QICVFP--WS---P-NSKSHRIS 511

  Fly   754 FLMAPPYHPLVQRGQLQQQSSIQAPSSLPYVMDLDLHSVMATELLEEAAKDSGLSDSSGSNYCEG 818
                      .:.|.:....|....|      |.|:.:::|.  :...||.|..:.|        
Zfish   512 ----------TEEGYVSHCGSDSEDS------DTDVDALLAH--VASTAKSSTTATS-------- 550

  Fly   819 RSHLGSHQLEAKNEQVLRRVQELQHLVQTSEQYLSEQEQGGGGGGVAM--LEFDSDCDSLNSS-- 879
                     :..|:::....::.:..::..|    |.|:.||....|:  .|.:.|.:.:|.|  
Zfish   551 ---------DKPNDELPEETEKTKSDMEKDE----EMEKEGGKEEEALEKKEREEDQEPINESIN 602

  Fly   880 ----KVSSTEGSQGGTIL-GPGAIIPPGHP----------LKHSDSLTLLAETINHELSGI-TQG 928
                |.:.....:.||.. |......|.||          .:.|||.    :|.:|.::.: :..
Zfish   603 DNNEKTTDINDERLGTEKEGKSQENKPEHPPCIIIVDDPSSEASDSY----QTESHFMTSMSSDS 663

  Fly   929 LNAIPESAPVSTSAPPTP-ATPKRKPSLCSTSSPRPQRKLNGFSQLLSDLQALGTDFSQSESDSE 992
            ::|:.|...::..:...| ..|.:....|.          :.||..||..|.|..| |||:||..
Zfish   664 IDALEEDDLMTYFSTRHPWHLPVKDSYHCE----------DRFSPSLSPQQQLCKD-SQSQSDLC 717

  Fly   993 SVASPAQSPTTRRPQMMLLQAAGSSAGSVAPAKQQLSQRSSFGLHSPDGTHFGAETKDYNLREYL 1057
            |..|..:...    ......||.|:.....|:....|:..       |....|.|.:::      
Zfish   718 SADSHCEPDI----DQFFCFAALSNIAECLPSPPAASEEE-------DCEESGIENENH------ 765

  Fly  1058 QQLKEISNAASADTDVAARQLSEIYGFEVREDTFIETDT------------DLIDLRAIPPP-QT 1109
               |:.|.|...::::   .|...|.|     ||.:.||            |  ..|::|.| .:
Zfish   766 ---KKESPAKCPESNL---PLPADYVF-----TFEQGDTRHYYNICSNVTPD--SARSLPKPFSS 817

  Fly  1110 PDELDSLSLMNAA------------PPKGFEGKAEELDSF------------------------- 1137
            ||..::.......            ||.|| |.:...|.|                         
Zfish   818 PDSTETRQDQEGVARNGKEAVPIFHPPPGF-GDSSSDDEFFDAQERFTSPEEPLSTAMTRENSAE 881

  Fly  1138 ---------LQQIMVAPPTQKATPA--------KELTPEEIMSFIIPPPPNLEQQQVVAPVETEC 1185
                     |.||.:....|:|..:        |.:|.:|:.:|      |...::..:.:||. 
Zfish   882 SSTILNTLRLGQIGICVSEQEAKDSERKQKEEGKMITQDELSNF------NKRSKKRRSFMETN- 939

  Fly  1186 LYSNSVQAKREFFQSVANGNN----GTVSHSPHIIEYATVERKSKFSC----------CPT---- 1232
             |::.|....:...|.:.||:    |::     ::.:.|    .:.:|          |||    
Zfish   940 -YTSLVSFPEQDQLSNSYGNSIQSCGSL-----LVNHGT----GRMACFDSGCSDQVPCPTVSSL 994

  Fly  1233 SKKEEQPGQEELQP---------PPRTPTTEQLSPPPARPPKSAELLQRYSPKKQVRIAASPVMQ 1288
            :..|.:|.|.|.:|         .|...|..|:.      ..|.:..||    ||.||.    |:
Zfish   995 TDSEGEPAQLESKPITPSKVNGSGPHNSTVTQVG------SHSNKAFQR----KQQRIE----ME 1045

  Fly  1289 PQERRELCPPQLPPRGSPTL-----------------DGSQSSPTNAVSG-------------PK 1323
            |.........:|....|||:                 .|:......||.|             .|
Zfish  1046 PDSMEFKSVTELMSTVSPTIMAVRSHMDVHDKVSTRNHGTDDEEEGAVGGLESLFGGHLFFDMSK 1110

  Fly  1324 KPPLPPIACRPRP------------SNGVNSPNSS-------SPGSAPPAHYSPPIPATVRLPHL 1369
            |.....:....|.            ...||..:||       ||.|.|..|. |.|..|      
Zfish  1111 KKCDSSVLFGQRDDQVTRQMEDLFHGRSVNQKSSSLPRLGQISPSSLPYFHV-PSISYT------ 1168

  Fly  1370 NQANGTLPLLPKKPQQLHGEKLFIKNGHLIDGEALLAKTDVAMSGLLIKLDQVAAQCSVAQAAGG 1434
                 |.|...:....||.|  |....|.::                 ..::..:| |::.:.|.
Zfish  1169 -----TSPNTERDSNTLHLE--FGMGKHSVE-----------------PTERTRSQ-SMSASFGS 1208

  Fly  1435 GT----------------SIDEEK--------FQRARNELTEQTLALVTASKFLVASMSDMTL-- 1473
            |.                ..||.:        |:.|:|.|      |...|..::..:|..||  
Zfish  1209 GAPHCPSRHLFCQQVRTPESDETENSSDPTVPFEPAQNFL------LTPCSSGILGRLSASTLRG 1267

  Fly  1474 --ITLPEHL-------------TSCLTAIRRIT-------------ELAQDMTRHTSAPLQTRNI 1510
              ..||.:|             :..:..:||::             |:.:|.|.:..||..|...
Zfish  1268 KIQNLPLYLSRSQQILNAGSNGSGIVEPLRRLSESQLQRNEVEVAKEVTEDATINEGAPEVTEVK 1332

  Fly  1511 VL-----KVHDVASSFRELVGVEIGPIGAGQLALQAE 1542
            |:     :|.:|....||:  ..|.|...||..::.|
Zfish  1333 VVTIVSEEVTEVIEEVREV--PHISPQACGQRKIKNE 1367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42788NP_731964.2 WW 177..203 CDD:278809
WW 218..246 CDD:238122
PDZ_signaling 257..333 CDD:238492 28/84 (33%)
B41 396..617 CDD:214604 93/222 (42%)
UBQ 396..477 CDD:294102 38/80 (48%)
FERM_M 495..617 CDD:278785 50/123 (41%)
PH-like 613..715 CDD:302622 27/108 (25%)
frmpd1XP_005170993.1 PDZ_signaling 59..134 CDD:238492 24/74 (32%)
B41 183..400 CDD:214604 93/222 (42%)
FERM_B-lobe 281..392 CDD:271216 45/114 (39%)
FERM_C_FRMPD1_FRMPD3_FRMPD4 396..500 CDD:270004 30/129 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4089
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.