DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42788 and frmpd4

DIOPT Version :9

Sequence 1:NP_731964.2 Gene:CG42788 / 41817 FlyBaseID:FBgn0261859 Length:1560 Species:Drosophila melanogaster
Sequence 2:XP_002933853.2 Gene:frmpd4 / 100494902 XenbaseID:XB-GENE-6050308 Length:1742 Species:Xenopus tropicalis


Alignment Length:1734 Identity:428/1734 - (24%)
Similarity:679/1734 - (39%) Gaps:503/1734 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 GKEGRLYYCNHMTQSAGWLPACEDWSKHEELSYGWERAIDSKGRSYYINHLNKTTTYEAPECIRW 250
            ||..:|  .:|..:|:||.|....||..:...||||.|.:..||.::|:||.:|.|:|.|.....
 Frog     7 GKIAKL--SSHKAKSSGWPPPSGTWSLPQGPPYGWEMATNRDGRDFFISHLTQTATFEDPRIESC 69

  Fly   251 DEHPPEPRQVQLQRNASLGFGFVAGSERPVIVRFVTEGGPSIGKLQPGDQILAVNGEDVKDAPRD 315
            ..:||.||.::::|:..||||||||||:||:||.||.||||.|||.|||||:.:|.|.|..|||:
 Frog    70 QINPPVPRNIEMRRDPVLGFGFVAGSEKPVVVRSVTPGGPSEGKLVPGDQIIMINDEPVSSAPRE 134

  Fly   316 HVIQLVRACESQVNLLVCQPMAHCVLPGRKSTLLSAGKRAKLRSRPSRVRFAESVCVNG------ 374
            .||.|||:|:..:.|.|.||     .|..||..:||.|:|:|:|.|.:|||:|.|.:||      
 Frog   135 RVIDLVRSCKESILLTVVQP-----YPSPKSAFISAAKKARLKSNPVKVRFSEEVIINGQVSETV 194

  Fly   375 ---APLFPPSAFSLGDICVPPMANVLKVFLENGQTKSFKYDATTTVQDVVSSLLDKLCLCCGELF 436
               |.||.|              |||||:|||||||||::|:.|:::||:.:|.:||.:.|.|.|
 Frog   195 KDNALLFMP--------------NVLKVYLENGQTKSFRFDSGTSIKDVILTLQEKLSIKCIEHF 245

  Fly   437 SLVLEHVKSLKRNKLTLLDPQESLARIAARPGAHKLRCLFRITFVPISAAELAQRDLHALDYLYL 501
            ||:||........||.||..||:|.::..||.||.:||||||:|||....:|.:||..|.:|||:
 Frog   246 SLMLEQTTEGAGTKLLLLHEQETLTQVTQRPCAHMMRCLFRISFVPKDPIDLLRRDPVAFEYLYV 310

  Fly   502 QCCNDVNQERFAPELQPELALRLAALHMHQHALANNFAPAKLTVKLVEREFGLERFVPVSLFEGM 566
            |.||||.||||.|||:.:.|||||||.|: .|........|:::|.:|:|:|||.|:|.::.:.|
 Frog   311 QSCNDVVQERFGPELKYDTALRLAALQMY-IATVTTKQTQKISMKYIEKEWGLETFLPSAVLQSM 374

  Fly   567 KRKELRRLISHFLKLNAEMTGSSSKVLTQLQAKLHYLDIIASLPSYGAKCFSTNQREGVER---V 628
            |.|.:::.:||.:|.|..:.....| |:.||||:|||..::.|..||.:.|.....:|.:.   .
 Frog   375 KEKNIKKALSHLVKANQNLVPPGKK-LSGLQAKVHYLKFLSDLRLYGGRVFKAKLVQGEKHSDVT 438

  Fly   629 LLVSPRFGLSQISSARNSVQPQPISAIEDFTHVVVNR-----EDDVTCSVSIFMLGDRAVKFIME 688
            |||.||:|:|.:.:.:.::    ::.:.||:|  |||     |||:|..|.:.:|..:.:..:||
 Frog   439 LLVGPRYGISHVINTKTNL----VALLADFSH--VNRIEMYTEDDITVRVELHVLDVKPITLLME 497

  Fly   689 DRDGCEFSLVLGGYYRLLTG---NVLNILRE----REPNDEDNAPGFLSQHTVLPAGWSYLLPFH 746
            ..|....:.:..||||||..   ::.|::.:    ||..:|..     ::::.....|:| ||..
 Frog   498 SSDAMNLACLTAGYYRLLVDSRRSIFNVINKTTTNRETGNETR-----TKYSYQDCDWNY-LPKS 556

  Fly   747 T--------------------RAHSVNFLMAPPYH---------PLVQRGQLQQQSSIQAP---- 778
            |                    :..:.|.|.:|..|         .....|:|.||.:.|..    
 Frog   557 TIFGFEENQENQDSQQIFSDLKQRTANVLGSPLCHKDHRNLYIETTFNSGELDQQLTKQCEHIDL 621

  Fly   779 -----SSLPYVMDLD--LHSVMATE----------------------------LLEEAAKDSGLS 808
                 :|.|.::.:.  .|::.|.:                            ||:|:.:   :.
 Frog   622 ENSLNASQPSIISISGLEHTITAQDSPRSAKVSFIFGDPNLDTINPQNLGYERLLDESPE---MI 683

  Fly   809 DSSGSNYCEGRSHLGSHQLEAKNEQVLRRVQELQHLVQTS-EQYLSEQEQGGGGGGV-------- 864
            |.....|....:.:...:|....|.:        |....: ...:||.:..|...|:        
 Frog   684 DKQSIIYLNNANDIKDLELSPDAESI--------HFAANAVYANISESKMFGNAEGIEEPLLHDI 740

  Fly   865 --------------AMLEFDSDCDSLNSSKVSSTEGSQGG----TILGPG--------------- 896
                          |..|.|......|.:.:.|..||...    |.|.|.               
 Frog   741 CYSETTDDVEDDDEASCEEDVMVAEENQTDILSMSGSSDDIIDLTSLPPPEGDDNEDDFLLHSLN 805

  Fly   897 ---AIIPPG--------------------HPLKHSD----------------------------- 909
               |..|||                    :.:.|.|                             
 Frog   806 MAIAAPPPGFRDSSDEEDCQNLSKPSGAANSISHDDIPVSLIDAVPTNTDEKLKTILEETSVSDL 870

  Fly   910 ----SLTLLAETINHELSGITQGLNAIPESAPVSTSAPPTPATPKRKPSLCSTSSPRPQRKLNGF 970
                .||:..|....:.||:|......|||:  |.|...|.::...:.|..:|:...|:......
 Frog   871 QTLQDLTVSEENQRDDTSGVTMLRAYSPESS--SDSGNETNSSEMTESSELATAQKHPEVSARTI 933

  Fly   971 SQLLSDLQAL---GTDFSQSESDSESVASPAQSPTTRRPQMMLLQAAGSSAGSVAPAKQQLSQRS 1032
            ..:..|.|:|   .||||.|:..:.|:...|...:..|      |||...:.:| |:||.     
 Frog   934 LPVSEDYQSLMEEQTDFSVSKGQTGSITIKATLSSINR------QAAELQSKAV-PSKQV----- 986

  Fly  1033 SFGLHSPDGTHFGAETKDY-NLREYLQQL-------------------------------KEISN 1065
               :|| |......||.:. ::.||..::                               |:|..
 Frog   987 ---IHS-DNIEMEPETMEIKSVSEYFNKVHMGTLVYSCKKKNKLPDAEAKSHFDVNVMVKKQIGK 1047

  Fly  1066 AASADTDVAARQLSEIYGFEVREDTF----------------IETDTDLIDLRAIPPPQT--PDE 1112
            ...:|.::.::....:..|.:....|                .:..||...::.:|....  ..|
 Frog  1048 RPESDGELKSKDCQHLANFNLERTAFRKDSQRWYNTADRSASDKLSTDAHHIKTLPRLSCVGKTE 1112

  Fly  1113 LDSLSLMNAAPPKGFEGKAEELDSFLQQIMVAPPTQKAT-PAKELTPEEIMSFIIPPPPNLEQQQ 1176
            .|.:..||.....|.    ::.|.::.......|:::.| |..:....|.||.::.|..| ...:
 Frog  1113 TDIIEEMNDITLSGL----KQEDIYISNANYMSPSKEHTIPNADDASAEHMSKLVDPGDN-HIAK 1172

  Fly  1177 VVAPVETECLYS------NSVQAKREFFQSVANGNNGTVSHSP-------HIIEYATV------- 1221
            .::..::|..:|      :||.|.    .|..:.:..|...||       ||:..|:|       
 Frog  1173 NISSFQSEGHFSLQSSQCSSVDAG----CSTGSSSCATPVESPLCTGDVKHILCDASVKSGVLIP 1233

  Fly  1222 --ERKSKFSCCPTSKKEEQPGQEELQPPPRTPTTE----------QLSPPPARPPKSAELL---- 1270
              ||.|                  :.|....|.||          ::|.|....|.:||.:    
 Frog  1234 LDERSS------------------MLPNLGAPFTELHQQTEAACHRMSVPVMHAPVNAEPVFGTL 1280

  Fly  1271 ----QRYSPKKQVRIAASPVMQPQERRELCPPQLPPRGSPTLDGSQSSPTNAVSGPKKPPLPPIA 1331
                .|.|..|:    .:...:|.:.|.:  ..||...|....|..::|:|..|....|      
 Frog  1281 RDGCHRVSKIKE----TTAFTEPAKGRRV--GGLPAAASKHSKGDFTTPSNICSESNVP------ 1333

  Fly  1332 CRPRPSNGVNSPNSSSPGSAPPAHYSPPIPATVRLPHLNQANGTLPLLPKKPQQLHGEKLFIKNG 1396
                         :.|.....|.|.|....|.:.| |..:..|:|    |.|   |..|:..::.
 Frog  1334 -------------TQSQDFLHPHHGSLTCSAEITL-HPYEIGGSL----KMP---HNRKVLRRSS 1377

  Fly  1397 HLIDGEALLAKTDVAMSGLLIKLD--------------------QVAAQCSVAQAA--------- 1432
            .:|...:.:...|..:|.:.:.||                    :::..||.:..:         
 Frog  1378 SVITRSSGMDWADKKISSVSLCLDSTETGLRSKSEKHVEIPLVKKISKSCSQSSVSSISESKKFS 1442

  Fly  1433 --------------------------------------GGGTSIDEEKFQRA----RNELTEQTL 1455
                                                  |.....::|:.:.|    .||..|.:.
 Frog  1443 ATGSMQKVPKQSRSLPLLKLDASNWRCRGPFSYCFHNRGNNGDEEDEECEEANNGNNNEEKEHSC 1507

  Fly  1456 ALVTASKFLVASMSDMTLITLPE----HLTSCLTAIRRITELAQDMTRHTSAPLQTRNIVLKVHD 1516
            ..::.:......:||  |:..||    .|.|.:..|...::...|:|        .:.:.:..||
 Frog  1508 VYISQTPAETPKVSD--LLLSPECRNKELESPMATINTTSKQDIDVT--------AKQVEINTHD 1562

  Fly  1517 VASSFRELVG------VEIGPIGAGQLALQAECLANVLATLLRS 1554
            :  :|.|.:.      .::..|..|..|.|.:  ||.|..|:||
 Frog  1563 M--NFEEKIARINALKEKVYAIPDGFHAAQKD--ANELLCLIRS 1602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42788NP_731964.2 WW 177..203 CDD:278809 5/16 (31%)
WW 218..246 CDD:238122 13/27 (48%)
PDZ_signaling 257..333 CDD:238492 44/75 (59%)
B41 396..617 CDD:214604 103/220 (47%)
UBQ 396..477 CDD:294102 41/80 (51%)
FERM_M 495..617 CDD:278785 53/121 (44%)
PH-like 613..715 CDD:302622 32/112 (29%)
frmpd4XP_002933853.2 WW 36..66 CDD:238122 14/29 (48%)
PDZ_signaling 76..152 CDD:238492 44/75 (59%)
B41 205..424 CDD:214604 103/220 (47%)
FERM_f0 205..>238 CDD:293120 19/32 (59%)
FERM_M 300..424 CDD:278785 55/125 (44%)
FERM_C_FRMPD1_FRMPD3_FRMPD4 420..524 CDD:270004 31/109 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 127 1.000 Domainoid score I5304
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007172
OrthoInspector 1 1.000 - - otm48449
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4089
SonicParanoid 1 1.000 - - X1331
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.940

Return to query results.
Submit another query.