DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sdr and Ret

DIOPT Version :9

Sequence 1:NP_001287331.1 Gene:Sdr / 41809 FlyBaseID:FBgn0038279 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster


Alignment Length:971 Identity:187/971 - (19%)
Similarity:302/971 - (31%) Gaps:370/971 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 SPVLASSDDQTACGSLEINKIAD----------LRKLQNCTHVVGHVRLAYVDLTDVSGNYSLDS 84
            |.|.|.|.....|..:.::|:.:          ||..|:          ...:..:.:|:.:..|
  Fly   363 SRVDAMSATANVCYHINLSKLHESEQELPQALPLRARQH----------RIFESEEFNGDSAGRS 417

  Fly    85 LASNVTEISDYLMVYRCTGLISLQSIFP-------RLRIIRGQELLFDQYSLVVYENRNLRELGL 142
            |:....:....:.||| :...:.:.:.|       |||.||     ||     :.|:: |...|:
  Fly   418 LSPPTVDYDKDVSVYR-SAASNFRVVQPDSFLDLMRLRSIR-----FD-----IVEDK-LGAFGI 470

  Fly   143 VELLRIQSGFIRVESNPLLCFVETVDWIYLMGNAT---RQHFS--------LKHNRPQ-SQCPLC 195
            ..    .||.:.|::..:|  .|..:.||.: |.|   :|..|        |.|.||: :.|.| 
  Fly   471 TS----TSGIVFVKNPQVL--EEAPETIYFL-NVTWIDQQRLSHVRVINVHLVHGRPENTSCEL- 527

  Fly   196 GSLSADFEFIRNSSERCWNVNTTQLRPQPPRLKDCPIACGLNGCDSAGK---------------- 244
                    .:::.|:.|     .|::.|...::.|.:|.|...|...|.                
  Fly   528 --------KVKSRSQTC-----AQIKYQSQCVRYCGLATGGGSCQWRGSNSAMFGTRYGSCVPES 579

  Fly   245 --CCDHNC--------------------VTGCYSQN------------CSLCANYQGRMGCV--- 272
              |.||.|                    :.|.:|.|            | :|.: .|:..|.   
  Fly   580 RYCPDHVCDPLEELNPMACPQDCTPAGRIVGPHSSNENKRGIYSASGTC-ICED-NGKCSCAPLD 642

  Fly   273 ------------NQCVASYELNKRRCIGHRECRELGRIPL----------IRGYQC-------VK 308
                        |:..|...|..||.....:       ||          :.|::|       |.
  Fly   643 EEPKMKKPRKRKNETEAEPLLGVRRGTPPNQ-------PLQDPMLLGVLNVAGFECDRSCMFFVI 700

  Fly   309 KCP----------------------GNQ------KEILVAKGIIHCQVECNGDF---HVKSAADL 342
            .||                      |.|      |:.|...|        .|||   .::|....
  Fly   701 TCPLLFVLLLLCLLIAQRKMLQRRLGKQSMTTSSKQALPESG--------GGDFALMPLQSGFRF 757

  Fly   343 EVLQDCVTINGSLTIELTNIKEKIVDAL-ENALASVKEITGYLKVIHSAQLMSLTFLQNLDAIRG 406
            |        :|....|....|.::...| |.....|  :.|:...|  |.|..:|.:......:|
  Fly   758 E--------SGDAKWEFPREKLQLDTVLGEGEFGQV--LKGFATEI--AGLPGITTVAVKMLKKG 810

  Fly   407 DKLVENKYALYVVNNYHLEHIWPPNHLVIIQRGTLFFHLNPRLCYEKIHQLQGSLKSGENISVAD 471
            ...||  |...:.....|:.:..||  ||...|.......|.|..|  :...|||:|...:|   
  Fly   811 SNSVE--YMALLSEFQLLQEVSHPN--VIKLLGACTSSEAPLLIIE--YARYGSLRSYLRLS--- 866

  Fly   472 VSPNSNGERVIC-----GDAVRSLNPKVEDLNSTAVRIILDYMDWE---GMETLIGYSYHYKEAP 528
                   .::.|     .|.|..:|          |:::|.:. |:   ||..|......:::..
  Fly   867 -------RKIECAGVDFADGVEPVN----------VKMVLTFA-WQICKGMAYLSELKLVHRDLA 913

  Fly   529 VQNVTMYDGR------HGCGHDNWLMDVVPNQSRRHV-ISGLKPYTQYAYFVKTLTRTEYHIQID 586
            .:||.:.||:      .|...|.:..|....:||..| :..:.|        ::|....|..:.|
  Fly   914 ARNVLLADGKICKISDFGLTRDVYEDDAYLKRSRDRVPVKWMAP--------ESLADHVYTSKSD 970

  Fly   587 AYS----------------------------KIGYFQTLPDRPSPVLRIYGSSEISSQILLHWWP 623
            .:|                            |.||..   |||.      ..||....|:...|.
  Fly   971 VWSFGVLCWELITLGASPYPGIAPQNLWSLLKTGYRM---DRPE------NCSEAVYSIVRTCWA 1026

  Fly   624 PRRPNGVIKNYFVTAEKYNATKEAKDKNYVNVELENAKDIDCECAGVL-PYYSGP---------- 677
            . .|||.....|:.:|            :..:...|||.||.|...|. |.|.|.          
  Fly  1027 D-EPNGRPSFKFLASE------------FEKLLGNNAKYIDLETNAVSNPLYCGDDSALITTELG 1078

  Fly   678 QPDD-EDYYNKEQITY------------EDALPNLIYVSRNHDYRRKEFE-----KVINYEH--- 721
            :|:. :..::..:|.|            |:.:|........:|..|...:     :|:.||:   
  Fly  1079 EPESLQHLWSPPKIAYDIHDQATSYDQSEEEMPVTSTAPPGYDLPRPLLDATANGQVLRYENDLR 1143

  Fly   722 -LLSIKK-------DEEPTRPPTTTPAP---------------TNATLAKERLAAINYENY 759
             .|:|:|       ....:.||.||..|               ||.:|..:.|.:..:|.:
  Fly  1144 FPLNIRKSSCTPSYSNMTSEPPATTSLPHYSVPVKRGRSYLDMTNKSLIPDNLDSREFEKH 1204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdrNP_001287331.1 Recep_L_domain 58..173 CDD:279382 24/121 (20%)
Furin-like 209..332 CDD:279142 37/232 (16%)
Recep_L_domain 347..461 CDD:279382 25/114 (22%)
FN3 491..578 CDD:214495 19/96 (20%)
RetNP_477044.1 PKc_like 770..1049 CDD:304357 67/339 (20%)
TyrKc 771..1042 CDD:197581 66/331 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45455300
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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