DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdr and Epha3

DIOPT Version :10

Sequence 1:NP_650408.1 Gene:Sdr / 41809 FlyBaseID:FBgn0038279 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_113752.2 Gene:Epha3 / 29210 RGDID:68389 Length:984 Species:Rattus norvegicus


Alignment Length:105 Identity:29/105 - (27%)
Similarity:44/105 - (41%) Gaps:23/105 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   576 LTRTEYHIQIDAYSKIGYFQTLPDR------------PSPVLRIYGSSEISSQILLHWWPPRRPN 628
            |..|.|..:|||.:.:....:.|.:            ||||:.|.......:.|.|.|..|..||
  Rat   400 LAHTNYTFEIDAINGVSELSSPPRQFAAVSITTNQAAPSPVMTIKKDRTSRNSISLSWQEPEHPN 464

  Fly   629 GVIKNYFVTAEKYNATKEAKDKNY-------VNVELENAK 661
            |:|.:|.|   || ..|:.::.:|       .||.:.:.|
  Rat   465 GIILDYEV---KY-YEKQEQETSYTILRARGTNVTISSLK 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdrNP_650408.1 Recep_L_domain 58..173 CDD:460032
Furin-like 210..332 CDD:395614
Recep_L_domain 347..461 CDD:460032
FN3 491..578 CDD:214495 1/1 (100%)
Epha3NP_113752.2 EphR_LBD_A3 29..201 CDD:198449
FN3 <323..>516 CDD:442628 29/105 (28%)
FN3 437..528 CDD:238020 22/68 (32%)
EphA2_TM <566..619 CDD:464211
PTKc_EphR_A 617..883 CDD:270651
SAM_EPH-A3 913..975 CDD:188943
PDZ-binding. /evidence=ECO:0000255 982..984
Blue background indicates that the domain is not in the aligned region.

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