DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sdr and Ros1

DIOPT Version :9

Sequence 1:NP_001287331.1 Gene:Sdr / 41809 FlyBaseID:FBgn0038279 Length:868 Species:Drosophila melanogaster
Sequence 2:XP_011241449.1 Gene:Ros1 / 19886 MGIID:97999 Length:2341 Species:Mus musculus


Alignment Length:1052 Identity:186/1052 - (17%)
Similarity:333/1052 - (31%) Gaps:405/1052 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 ASNVTEISDYLMVYRCTGLIS-----------------------------LQSIFPRLRIIRGQE 121
            |:|::::||..:.|:.:||:|                             |:.|.| ..:|..|:
Mouse   360 AANMSDVSDLRIFYQGSGLVSSISIDWLYQRMYFIMDKLVYVCELKNCSNLEEITP-FSLIAPQK 423

  Fly   122 LLFDQY---------------SLVVYENRNLRELGLVELLRIQSGFIRVESNPLLCFVETVD--- 168
            ::.|.|               :|.:...|:.:.:.:||...::...::.:|..::.|.:|:.   
Mouse   424 VVVDSYNGYLFYLLRDGIYRVNLPLPSGRDTKAVRIVESGTLKDFAVKPQSKRIIYFNDTMQLFM 488

  Fly   169 --------------WIYLM----------------GNATRQHFSLKHNRPQSQCPLCGSLSADFE 203
                          |:.|:                |.|..|..||..|.....|.|  |...:|.
Mouse   489 STFLDGSAFHRVLPWVPLVTVKSFACENNDFLITDGKAIFQQDSLSFNEFIVGCDL--SHIEEFG 551

  Fly   204 F----IRNSSERCWNVNTTQLRPQPPR------------LKDCPIACGLNGCDSAGKCCDHNCVT 252
            |    |..||.:.:.:      |..|:            ::..|.|..:....||.:...:.  .
Mouse   552 FGNLVIFGSSVQSYPL------PGHPQEVSVLFGSREALIQWTPPALAIGASPSAWQNWTYE--V 608

  Fly   253 GCYSQN----CSLCANYQGRMGCVNQCVAS--YELNKR----RCIGHRECRELGRI-------PL 300
            ..|||:    ..:.:|..|.|..|.:..:|  |.::.|    :..|......:|..       |.
Mouse   609 KVYSQDILEITQVFSNISGTMLNVPELQSSTKYTVSVRASSPKGPGPWSAPSVGTTLVPATEPPF 673

  Fly   301 IRGYQCVKK--------CPGNQKEILVA--------------------KGIIHCQ----VECNGD 333
            |   ..||:        |.....|.|.:                    ||.::.:    ::.:.:
Mouse   674 I---MAVKEDGLWSKPLCSFGPGEFLSSDVGNVSDMDWYNNSLYYSDTKGNVYVRPLNGMDISEN 735

  Fly   334 FHVKS------------------AADLEVLQDCVTINGSLTIELTNIKEKIVDALENALASVKEI 380
            :|:.|                  |....|:|....:.|...| :|::|     .|.|.:| |..:
Mouse   736 YHIPSIVGAGALAFEWLGHFLYWAGKTYVIQRQSVLTGHTDI-VTHVK-----LLVNDMA-VDSV 793

  Fly   381 TGYL--KVIHSAQLMSLT-----FLQNLDAIRGDKLVENKYALYVVNNYHLEHIWPPNHLVIIQR 438
            .|||  ..::|.:...|.     .||....:.|.|::    ||                .:.:..
Mouse   794 GGYLYWTTLYSVESTRLNGESSLVLQAQPWLSGKKVI----AL----------------TLDLSD 838

  Fly   439 GTLFFHLNPRLCYEKIHQLQGSLK--SGENI--------SVADVSPNS-----------NGERVI 482
            |.|::.:....|   ||.....|:  ||.:.        |.:::|.|:           ||.|:|
Mouse   839 GLLYWLVQDNQC---IHLYTAVLRGWSGGDATITEFAAWSTSEISQNALMYYSGRLFWINGFRII 900

  Fly   483 CGDAV---------------------RSLNPKVEDLNSTAVRIILDYMDWEGMETLIGYSYHYK- 525
            ....:                     .||.|...:.:||. ::|.|.:. |....:.|::..:: 
Mouse   901 TAQEIGQRTSVSVSEPAKFNQFTIIQTSLKPLPGNFSSTP-KVIPDPVQ-ESSFRIEGHTSSFQI 963

  Fly   526 ---EAPVQN--VTMYDGRHGCGHDNWLMDVVPNQSRR-HVISGLKPYTQYAYFVKTLTRTEYHIQ 584
               |.|..:  :..|...... |..:|  ::..||.. ..:.||:|||.            :::.
Mouse   964 LWNEPPAVDWGIVFYSVEFST-HSKFL--IIEQQSLPIFTVEGLEPYTL------------FNLS 1013

  Fly   585 IDAYSKIGYFQ----------TLPDRP-SPVLRIYGSSEISSQ----ILLHWWPPRRPNGVIKNY 634
            :..|:..|..|          ::|..| :|.:.|..|...:.:    :...|..|:..|||:..:
Mouse  1014 VTPYTYWGKGQKTSLSFRAPESVPSAPENPRIFILSSGRYTKKNEVVVEFRWNKPKHENGVLTKF 1078

  Fly   635 --FVTAEKYNATKEAKD--------KNYVNVELENAKDIDCECAGVLPYYS-----------GPQ 678
              |....|.:.|..:.:        ...::.:||          .|.|.|:           ||.
Mouse  1079 EIFYHISKQSGTNRSTEDWMSASVIPPVMSFQLE----------AVSPEYTVAFQVRVFTSKGPG 1133

  Fly   679 PDDEDYYNK---------------EQITYEDALPNLI--------------YVS----------- 703
            |..:...:|               .:|.:.|...|.:              |.:           
Mouse  1134 PFSDIVMSKTSEIKPCPYLISLLGNKIVFLDMDQNQVLWTFSLEGDVSTVGYTTDDEMGYFAQGD 1198

  Fly   704 -------RNHDYRRKEFE-------KVINYE----HL-LSIKKDEEPTR-----PPTTTPAPTNA 744
                   |||. ..|.|:       :||..:    || .::|..:..|:     ......:|...
Mouse  1199 TLFLLNLRNHS-SSKLFQDALVSDIRVIAVDWIARHLYFALKASQNGTQIFNVDLEHKVKSPREV 1262

  Fly   745 TLAKERLAAINYENYRLNSEKKQRDLQDLDQH-------KYTIRHAL-PKCQNSHASVVQQVEEK 801
            ...|.....|::..|.|.|.....::.||...       .:|.:|.| ||..|.|.      ..:
Mouse  1263 KTCKAHTTIISFSIYPLLSRLYWTEVSDLGHQMFYCNISNHTSQHVLQPKASNQHG------RSQ 1321

  Fly   802 C---VAEEPLSG 810
            |   |.|..|||
Mouse  1322 CSCNVTESELSG 1333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdrNP_001287331.1 Recep_L_domain 58..173 CDD:279382 23/147 (16%)
Furin-like 209..332 CDD:279142 28/183 (15%)
Recep_L_domain 347..461 CDD:279382 24/120 (20%)
FN3 491..578 CDD:214495 19/93 (20%)
Ros1XP_011241449.1 FN3 112..179 CDD:214495
FN3 207..291 CDD:238020
FN3 568..664 CDD:238020 18/97 (19%)
FN3 1037..1143 CDD:238020 21/115 (18%)
FN3 1552..1631 CDD:238020
FN3 1651..1742 CDD:238020
FN3 1747..1840 CDD:238020
PTKc_c-ros 1949..2210 CDD:270640
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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