DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdr and Epha4

DIOPT Version :10

Sequence 1:NP_650408.1 Gene:Sdr / 41809 FlyBaseID:FBgn0038279 Length:868 Species:Drosophila melanogaster
Sequence 2:NP_031962.2 Gene:Epha4 / 13838 MGIID:98277 Length:986 Species:Mus musculus


Alignment Length:176 Identity:39/176 - (22%)
Similarity:64/176 - (36%) Gaps:40/176 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   494 VEDLNSTAVRIILDYMDWEGMETL-----IGYSYHYKEAPVQNVTMYDGRHGCGHDNWLMDVVPN 553
            :.::|.|:|.     ::|...:..     |.|:...|:....:.:..   ..||..   :...|.
Mouse   336 ISNVNETSVN-----LEWSSPQNTGGRQDISYNVVCKKCGAGDPSKC---RPCGSG---VHYTPQ 389

  Fly   554 QSRRHVISGLKPYTQYAYFVKTLTRTEYHIQIDAYSKIGYFQTLPDR------------PSPVLR 606
            |      :|||  |........|..|.|..:|.|.:.:..:...||:            ||.:..
Mouse   390 Q------NGLK--TTRVSITDLLAHTNYTFEIWAVNGVSKYNPSPDQSVSVTVTTNQAAPSSIAL 446

  Fly   607 IYGSSEISSQILLHWWPPRRPNGVIKNYFVTAEKYNATKEAKDKNY 652
            :.........:.|.|..|.||||||..|.|   || ..|:..:::|
Mouse   447 VQAKEVTRYSVALAWLEPDRPNGVILEYEV---KY-YEKDQNERSY 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdrNP_650408.1 Recep_L_domain 58..173 CDD:460032
Furin-like 210..332 CDD:395614
Recep_L_domain 347..461 CDD:460032
FN3 491..578 CDD:214495 16/88 (18%)
Epha4NP_031962.2 EphR_LBD_A4 30..203 CDD:198450
FN3 <323..>547 CDD:442628 39/176 (22%)
FN3 441..532 CDD:238020 17/52 (33%)
EphA2_TM 562..618 CDD:464211
PTKc_EphR_A 616..882 CDD:270651
SAM_EPH-A4 911..981 CDD:188944
PDZ-binding. /evidence=ECO:0000255 984..986
Blue background indicates that the domain is not in the aligned region.

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