DRSC/TRiP Functional Genomics Resources

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Protein Alignment VhaPPA1-2 and Atp5mc2

DIOPT Version :10

Sequence 1:NP_650406.2 Gene:VhaPPA1-2 / 41806 FlyBaseID:FBgn0262514 Length:212 Species:Drosophila melanogaster
Sequence 2:NP_080744.1 Gene:Atp5mc2 / 67942 MGIID:1915192 Length:146 Species:Mus musculus


Alignment Length:130 Identity:30/130 - (23%)
Similarity:52/130 - (40%) Gaps:38/130 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 VRSPRIKTKNLISVIFCEAVAIYGLITAILLSGNVNKFSSVRLITDSTVMATNMFTGFATFGAGL 149
            ::.|::.|...:|     ::|:...:|:::.|   ..|.:..:..|....|..:..|.||     
Mouse    35 LKRPQMPTDESLS-----SLAVRRPLTSLIPS---RSFQTSAISRDIDTAAKFIGAGAAT----- 86

  Fly   150 CVGMVNVACGIAVGIVGSGAALAD---------AANSALFVKILIVEIFG----SAIGLFGLIVA 201
                        ||:.||||.:..         |.|.:|..::....|.|    .|:|||.|:||
Mouse    87 ------------VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVA 139

  Fly   202  201
            Mouse   140  139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VhaPPA1-2NP_650406.2 ATP-synt_Fo_Vo_Ao_c 53..115 CDD:365782 5/29 (17%)
ATP-synt_Vo_c_ATP6F_rpt2 140..204 CDD:349418 21/75 (28%)
Atp5mc2NP_080744.1 ATP9 72..146 CDD:164765 23/85 (27%)

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