DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VhaPPA1-2 and atp6v0cb

DIOPT Version :9

Sequence 1:NP_650406.2 Gene:VhaPPA1-2 / 41806 FlyBaseID:FBgn0262514 Length:212 Species:Drosophila melanogaster
Sequence 2:NP_991117.1 Gene:atp6v0cb / 325402 ZFINID:ZDB-GENE-030131-4127 Length:153 Species:Danio rerio


Alignment Length:159 Identity:53/159 - (33%)
Similarity:84/159 - (52%) Gaps:14/159 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 NPFLWSGMGIFLACALSVLGAASGIYMIGCSVAGGGVRSPRIKTKNLISVIFCEAVAIYGLITAI 113
            :|| ::.||...|...|.||||.|....|..:|...|..|.:..|::|.|:....:|||||:.|:
Zfish     9 SPF-FAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAV 72

  Fly   114 LLSGNVNKFSSVRLITDSTVMATNMFTGFATFGAGLCVGMVNVACGIAVGIVGSGAALADAANSA 178
            |::.:::.             ...::..|...||||.||:..:|.|.|:||||.......|....
Zfish    73 LIANSISD-------------KITLYKSFLHLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPR 124

  Fly   179 LFVKILIVEIFGSAIGLFGLIVAIYMTSK 207
            |||.::::.||...:||:|||||:.:::|
Zfish   125 LFVGMILILIFAEVLGLYGLIVALILSTK 153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VhaPPA1-2NP_650406.2 ATP-synt_C 56..166 CDD:294318 35/109 (32%)
ATP-synt_C 143..204 CDD:278563 26/60 (43%)
atp6v0cbNP_991117.1 V_ATP_synt_C 11..116 CDD:130170 38/118 (32%)
ATP-synt_Vo_c_ATP6C_rpt2 84..151 CDD:349416 27/66 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0636
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.