DRSC/TRiP Functional Genomics Resources

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Protein Alignment VhaPPA1-2 and Vha16-3

DIOPT Version :9

Sequence 1:NP_650406.2 Gene:VhaPPA1-2 / 41806 FlyBaseID:FBgn0262514 Length:212 Species:Drosophila melanogaster
Sequence 2:NP_001189086.1 Gene:Vha16-3 / 317846 FlyBaseID:FBgn0028667 Length:158 Species:Drosophila melanogaster


Alignment Length:157 Identity:54/157 - (34%)
Similarity:82/157 - (52%) Gaps:13/157 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 FLWSGMGIFLACALSVLGAASGIYMIGCSVAGGGVRSPRIKTKNLISVIFCEAVAIYGLITAILL 115
            |.:..||...|...|.||||.|....|..:|...|..|.:..|::|.|:....:|||||:.::|:
  Fly    15 FFFGSMGAASAIIFSALGAAYGTAKSGTGIAAMAVMRPELIMKSIIPVVMAGIIAIYGLVVSVLI 79

  Fly   116 SGNVNKFSSVRLITDSTVMATNMFTGFATFGAGLCVGMVNVACGIAVGIVGSGAALADAANSALF 180
            :|:::...::|             .|:....|||.||...:|.|.|:||||.......|....||
  Fly    80 AGSLSDSYTIR-------------KGYIHLAAGLSVGFAGLAAGFAIGIVGDAGVRGTAQQPRLF 131

  Fly   181 VKILIVEIFGSAIGLFGLIVAIYMTSK 207
            |.::::.||...:||:|||||||:.:|
  Fly   132 VGMILILIFAEVLGLYGLIVAIYLYTK 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VhaPPA1-2NP_650406.2 ATP-synt_C 56..166 CDD:294318 35/109 (32%)
ATP-synt_C 143..204 CDD:278563 26/60 (43%)
Vha16-3NP_001189086.1 V_ATP_synt_C 16..121 CDD:130170 37/117 (32%)
ATP-synt_Vo_c_ATP6C_rpt2 91..156 CDD:349416 28/64 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453382
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0636
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10263
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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