DRSC/TRiP Functional Genomics Resources

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Protein Alignment VhaPPA1-2 and Atp5mc1

DIOPT Version :9

Sequence 1:NP_650406.2 Gene:VhaPPA1-2 / 41806 FlyBaseID:FBgn0262514 Length:212 Species:Drosophila melanogaster
Sequence 2:NP_059007.1 Gene:Atp5mc1 / 29754 RGDID:61933 Length:136 Species:Rattus norvegicus


Alignment Length:84 Identity:23/84 - (27%)
Similarity:36/84 - (42%) Gaps:23/84 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 STVMATNMFTGFATFGAGLCVGMVNVACGIAVGIVGSGAALAD---------AANSALFVKILIV 186
            ::|::.::.|.....|||          ...||:.||||.:..         |.|.:|..::...
  Rat    56 TSVISRDIDTAAKFIGAG----------AATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSY 110

  Fly   187 EIFG----SAIGLFGLIVA 201
            .|.|    .|:|||.|:||
  Rat   111 AILGFALSEAMGLFCLMVA 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VhaPPA1-2NP_650406.2 ATP-synt_C 56..166 CDD:294318 7/34 (21%)
ATP-synt_C 143..204 CDD:278563 21/72 (29%)
Atp5mc1NP_059007.1 ATP9 62..136 CDD:164765 22/78 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0636
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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