DRSC/TRiP Functional Genomics Resources

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Protein Alignment VhaPPA1-2 and Atp6v0c

DIOPT Version :9

Sequence 1:NP_650406.2 Gene:VhaPPA1-2 / 41806 FlyBaseID:FBgn0262514 Length:212 Species:Drosophila melanogaster
Sequence 2:NP_570836.1 Gene:Atp6v0c / 170667 RGDID:621394 Length:155 Species:Rattus norvegicus


Alignment Length:152 Identity:52/152 - (34%)
Similarity:80/152 - (52%) Gaps:13/152 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 MGIFLACALSVLGAASGIYMIGCSVAGGGVRSPRIKTKNLISVIFCEAVAIYGLITAILLSGNVN 120
            ||...|...|.:|||.|....|..:|...|..|.:..|::|.|:....:|||||:.|:|::.:  
  Rat    17 MGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANS-- 79

  Fly   121 KFSSVRLITDSTVMATNMFTGFATFGAGLCVGMVNVACGIAVGIVGSGAALADAANSALFVKILI 185
                   :||    ...::..|...||||.||:..:|.|.|:||||.......|....|||.:::
  Rat    80 -------LTD----GITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMIL 133

  Fly   186 VEIFGSAIGLFGLIVAIYMTSK 207
            :.||...:||:|||||:.:::|
  Rat   134 ILIFAEVLGLYGLIVALILSTK 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VhaPPA1-2NP_650406.2 ATP-synt_C 56..166 CDD:294318 36/109 (33%)
ATP-synt_C 143..204 CDD:278563 26/60 (43%)
Atp6v0cNP_570836.1 V_ATP_synt_C 13..118 CDD:130170 38/113 (34%)
ATP-synt_Vo_c_ATP6C_rpt2 86..153 CDD:349416 27/66 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0636
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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