DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup93-2 and nup93

DIOPT Version :9

Sequence 1:NP_650404.1 Gene:Nup93-2 / 41804 FlyBaseID:FBgn0038274 Length:796 Species:Drosophila melanogaster
Sequence 2:NP_571056.2 Gene:nup93 / 30172 ZFINID:ZDB-GENE-990415-46 Length:820 Species:Danio rerio


Alignment Length:825 Identity:293/825 - (35%)
Similarity:461/825 - (55%) Gaps:47/825 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLQRAQNLNNDAKAECELPAVERTLQQVLRATTELHSRV---TQTGCKEIQAHILLGSKGVDLPK 67
            |||:|:.|..:.:|..|||.|||.||::.:|...|.||.   |.....:::|.|||||:|:|:..
Zfish     9 LLQQAEQLAAETEAVSELPHVERNLQEIQQAGERLRSRTLTRTSQDTADVKASILLGSRGLDIFH 73

  Fly    68 LNQKLEALSARKTFEPLDVKADTDVRTFLKNERENAILSVIEDTKKNISDSANKQRWASMNKVWN 132
            ::|:||:|||..|||||:...|||::.||||||:||:||.||::::.....|.:....||...|.
Zfish    74 ISQRLESLSAATTFEPLEPVKDTDIQGFLKNERDNALLSAIEESRRRTFLLAEEYHRDSMLVQWE 138

  Fly   133 EEKTRLLDALIAPSQNFIDLQRLPEPTIVNPLCQP-RSCLDPLELVYAQELRHYNELLLKSSHRP 196
            :.|.|:|..|:...::.:|..:..||:.|:.:..| ||.||.:|:.|::::..:||.::....:|
Zfish   139 QVKQRVLHTLLGAGEDALDFSQEVEPSFVSEVGVPGRSALDSVEVAYSRQIYVFNEKIVNGHLQP 203

  Fly   197 NLVQKFAHLSQSFGDCRLTDMWTLLACVTQISEPLRSDPIKSR---QQRPEFVTYAKSYLERRYR 258
            ||....|.:::|..|..:::||.::..:|.:......|.:|||   ..:..||..|..:||..|:
Zfish   204 NLGDLCASVAESLDDKNVSEMWLMVKQMTDVLLVPAKDTLKSRVSVDMQMAFVRQALQFLENSYK 268

  Fly   259 VFMC---------SQVGGSYANNSYQLVVAYVNHRFRAQQTIGLVDTVREIPLWPLVYYGLRCGA 314
            .:..         :|:||  ...:||||.:::|.:............|...|:|.|:|:.||||.
Zfish   269 NYTLVTVFGNLHQAQLGG--VPGTYQLVCSFLNIKLPTPLPGRQDGEVEGHPVWALIYFCLRCGD 331

  Fly   315 VKVAVEFLREAGSSHDEFA---QLVADRNAGETNSKIENQLRLQYANKIRNSTDAYKKAVYCILL 376
            :..|::.:.:|.....:|.   |...:......:...||:|||.|...:|||.|.||:||||::.
Zfish   332 LSAAMQVVNKAQHQLGDFKIWFQEYMNSPDRRLSPATENKLRLHYRRVLRNSADPYKRAVYCLIG 396

  Fly   377 GCDVNEVHGEVAKTIDDFLWMRLAMI--------QPGDADNYGKLQSMILEQYGEKYFNARQQPY 433
            .||:.:.|||||...:|:||::|..:        .|.|.....:||..:||.|||.:|:|..||:
Zfish   397 KCDIGDNHGEVADKTEDYLWLKLNQVCFDEDGSSSPQDRMTLAQLQKQLLEDYGESHFSASHQPF 461

  Fly   434 LYFETLALTGQFEAAIEFLARQDENRAHAVHMAIALFELGLLGSARSVSQPLLSIDIKDPQPLRR 498
            |||:.|.||.||||||.||.|.:..|:||||:|:.|:||.||..:...|..|||.:..||..:||
Zfish   462 LYFQVLFLTAQFEAAIAFLFRVERLRSHAVHVALVLYELKLLLKSSGQSAQLLSQEAGDPPMVRR 526

  Fly   499 LNLTRLIRQYVQRFERTDTSEALHYYYTLRCLKDSKGRNMFMACVCDLVVDSGVFDTTIFDLIFG 563
            ||..||:..|.::||.||..|||.|:|.||..|||:|.||||.||.:||::|     ..||::.|
Zfish   527 LNFIRLLMLYTRKFESTDPREALQYFYFLRNEKDSQGENMFMRCVSELVIES-----REFDMLLG 586

  Fly   564 KRQSSDQNDVNSGLFRQFECPEFDTRTMAAQVGDELAALGNFEMSARLYEMAGKYNLAVKHICIL 628
            :.:.....  ..|:..:|   ..|||.:..:|..|....|.||.:.:|||:|...:..::.:..|
Zfish   587 RLEKDGSR--KPGVIDKF---AGDTRAIITKVASEAENKGLFEEAVKLYELAKNADKVLELMNKL 646

  Fly   629 MAQVVHLPTLGGSLRERLGQDAQRFNQLLASDSIDVEPKMKSSFVLLQDLLIFFNFYHDGKFNAA 693
            ::.|:...:...|.:|||...|....:...::.:..|..:.::|.||.||:.||:.||.|..:.|
Zfish   647 LSPVIAQVSEPQSNKERLKNMAVAIAERYRANGVAGEKSVDNTFYLLLDLMTFFDEYHAGHIDRA 711

  Fly   694 LDLLRQTQLVPNTLDDVDVVLGNVKQLSGEVIKVLPDVIVAAMEIAQKQYKQLK-AGSGS----- 752
            .|::.:.:|||.:.|.|:..:...:..|.||...|.:|::|.|.|...|||:|| |.:|:     
Zfish   712 YDVIERLKLVPLSQDSVEERVAAFRNFSDEVRHNLSEVLLATMNILFTQYKRLKGAAAGTPGRPQ 776

  Fly   753 -SLEQTQMQQLRQRAKALSNMAATMPYRLPNDTNKRLIELELDMH 796
             :||...| .||.:|:||...|..:|||:..|||.||:::|:.|:
Zfish   777 RTLEDRDM-LLRIQARALITFAGMIPYRMAGDTNARLVQMEVLMN 820

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup93-2NP_650404.1 DUF2461 178..>238 CDD:295279 13/59 (22%)
Nic96 213..781 CDD:282017 206/597 (35%)
nup93NP_571056.2 GluZincin 4..>127 CDD:301352 54/117 (46%)
Nic96 220..804 CDD:282017 205/596 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590018
Domainoid 1 1.000 318 1.000 Domainoid score I1230
eggNOG 1 0.900 - - E1_KOG2168
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40971
Inparanoid 1 1.050 468 1.000 Inparanoid score I1496
OMA 1 1.010 - - QHG59183
OrthoDB 1 1.010 - - D187731at2759
OrthoFinder 1 1.000 - - FOG0002723
OrthoInspector 1 1.000 - - otm26138
orthoMCL 1 0.900 - - OOG6_103333
Panther 1 1.100 - - LDO PTHR11225
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R780
SonicParanoid 1 1.000 - - X3522
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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