DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup93-2 and Nup93

DIOPT Version :9

Sequence 1:NP_650404.1 Gene:Nup93-2 / 41804 FlyBaseID:FBgn0038274 Length:796 Species:Drosophila melanogaster
Sequence 2:NP_001011925.1 Gene:Nup93 / 291874 RGDID:1311525 Length:819 Species:Rattus norvegicus


Alignment Length:829 Identity:301/829 - (36%)
Similarity:462/829 - (55%) Gaps:56/829 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLQRAQNLNNDAKAECELPAVERTLQQVLRATTELHSR-VTQTG--CKEIQAHILLGSKGVDLPK 67
            |||:|:.|..:.:...|||.|||.||::.:|...|.|| :|:|.  ..:::|.:||||:|:|:..
  Rat     9 LLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLGSRGLDISH 73

  Fly    68 LNQKLEALSARKTFEPLDVKADTDVRTFLKNERENAILSVIEDTKKNISDSANKQRWASMNKVWN 132
            ::|:||:|||..|||||:...|||::.|||||::||:||.||:::|.....|.:....||...|.
  Rat    74 ISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEWE 138

  Fly   133 EEKTRLLDALIAPSQNFIDLQRLPEPTIVNPLCQP-RSCLDPLELVYAQELRHYNELLLKSSHRP 196
            :.|.|:|..|:|..::.:|..:..||:.|:.:..| ||.||.:|:.||:::..|||.::....:|
  Rat   139 QVKQRILHTLLASGEDALDFTQESEPSYVSDVSPPGRSSLDSIEMAYARQIYIYNEKIVSGHLQP 203

  Fly   197 NLVQKFAHLSQSFGDCRLTDMWTLLACVTQISEPLRSDPIKSR---QQRPEFVTYAKSYLERRYR 258
            |||...|.::: ..|..::|||.::..:|.:.....:|.:|||   :.|.:||..|..|||:.|:
  Rat   204 NLVDLCASVAE-LDDKSISDMWAMVKQMTDVVLTPATDALKSRSSVEVRMDFVKQALGYLEQSYK 267

  Fly   259 VFMC---------SQVGGSYANNSYQLVVAYVNHRFRAQQTIGLVD-TVREIPLWPLVYYGLRCG 313
            .:..         :|:||  ...:||||.:::|.:..|... ||.| .|...|:|.|:||.:|||
  Rat   268 NYTLVTVFGNLHQAQLGG--VPGTYQLVRSFLNIKLPAPSP-GLQDGEVEGHPVWALIYYCMRCG 329

  Fly   314 AVKVAVEFLREAGSSHDEFAQLVADRNAGETNSK-------IENQLRLQYANKIRNSTDAYKKAV 371
            .:..|.:.:..|.....||.....:    ..|||       .||:|||.|...:||:||.||:||
  Rat   330 DLLAASQVVSRAQHQLGEFKTWFQE----YMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAV 390

  Fly   372 YCILLGCDVNEVHGEVAKTIDDFLWMRLAMI--------QPGDADNYGKLQSMILEQYGEKYFNA 428
            |||:..||:.:...|||...:|:||::|..:        .|.|.....:.|..:||.|||.:|..
  Rat   391 YCIIGRCDITDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTV 455

  Fly   429 RQQPYLYFETLALTGQFEAAIEFLARQDENRAHAVHMAIALFELGLLGSARSVSQPLLSIDIKDP 493
            .|||:|||:.|.||.||||||.||.|.:..|.||||:|:.||||.||..:...|..|||.:..||
  Rat   456 NQQPFLYFQVLFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDP 520

  Fly   494 QPLRRLNLTRLIRQYVQRFERTDTSEALHYYYTLRCLKDSKGRNMFMACVCDLVVDSGVFDTTIF 558
            ..:||||..||:..|.::||.||..|||.|:|.||..|||:|.|||:.||.:||::|     ..|
  Rat   521 PCMRRLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIES-----REF 580

  Fly   559 DLIFGKRQSSDQNDVNSGLFRQFECPEFDTRTMAAQVGDELAALGNFEMSARLYEMAGKYNLAVK 623
            |:|.||.::....  ..|:..:|..   ||:.:..:|.......|.||.:|:||::|...:..::
  Rat   581 DMILGKLENDGSR--KPGVIDKFTS---DTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLE 640

  Fly   624 HICILMAQVVHLPTLGGSLRERLGQDAQRFNQLLASDSIDVEPKMKSSFVLLQDLLIFFNFYHDG 688
            .:..|::.||...:...|.:|||...|....:...:..|.....:.|:|.||.||:.||:.||.|
  Rat   641 LMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSG 705

  Fly   689 KFNAALDLLRQTQLVPNTLDDVDVVLGNVKQLSGEVIKVLPDVIVAAMEIAQKQYKQLKAGSGSS 753
            ..:.|.|::.:.:|||...:.::..:...:..|.|:...|.:|::|.|.|...|:|:||..|.||
  Rat   706 HIDRAFDIIDRLKLVPLNQESMEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKGTSPSS 770

  Fly   754 LEQTQM------QQLRQRAKALSNMAATMPYRLPNDTNKRLIELELDMH 796
            ..:.|.      .|||.:|:||...|..:|||...|||.||:::|:.|:
  Rat   771 ATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDTNARLVQMEVLMN 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup93-2NP_650404.1 DUF2461 178..>238 CDD:295279 16/59 (27%)
Nic96 213..781 CDD:282017 212/601 (35%)
Nup93NP_001011925.1 Nic96 220..802 CDD:282017 210/598 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348859
Domainoid 1 1.000 324 1.000 Domainoid score I1166
eggNOG 1 0.900 - - E1_KOG2168
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40971
Inparanoid 1 1.050 476 1.000 Inparanoid score I1426
OMA 1 1.010 - - QHG59183
OrthoDB 1 1.010 - - D187731at2759
OrthoFinder 1 1.000 - - FOG0002723
OrthoInspector 1 1.000 - - otm44495
orthoMCL 1 0.900 - - OOG6_103333
Panther 1 1.100 - - LDO PTHR11225
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3522
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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