DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycC and Ccnh

DIOPT Version :9

Sequence 1:NP_476848.1 Gene:CycC / 41801 FlyBaseID:FBgn0004597 Length:267 Species:Drosophila melanogaster
Sequence 2:NP_443213.3 Gene:Ccnh / 84389 RGDID:69419 Length:323 Species:Rattus norvegicus


Alignment Length:297 Identity:75/297 - (25%)
Similarity:129/297 - (43%) Gaps:60/297 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 FWQSSHSQQW-ILDKPDLLRER------------------QHDLLALNEDE-------YQKVFIF 43
            :..||..:.| ...:..|.|.|                  .:|.|.|...|       |:|..:.
  Rat     2 YHNSSQKRHWTFASEEQLARLRADANRKFKCKAVANGKVLPNDPLFLEPHEEMTLCKYYEKRLLE 66

  Fly    44 FANVIQVLGEQLKLRQQVIATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEEFGVISNSRL 108
            |.:|.:.     .:.:.|:.||.:||||||..||:....|.::..||..||.||:||.|.|...:
  Rat    67 FCSVFKP-----AMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFV 126

  Fly   109 ISICQSAIKTKFSYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQD------MG 167
            .::.:|.:        .||  .....|||.|..|::.|:..|||:.||||....:.|      |.
  Rat   127 GNLRESPL--------GQE--KALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDIKTRYPML 181

  Fly   168 QEDQLLTLSWRIVNDSLR----TDVCLLYPPYQIAIACL----QIACVILQKDATKQWFAELN-V 223
            :..::|.   :..:|.|.    ||..|||.|.|||:..:    ..|.:.::...::....:.| .
  Rat   182 ENPEILR---KTADDFLSRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRT 243

  Fly   224 DLDKVQEIVRAIVNLYELWKDWKEKDEIQMLLSKIPK 260
            .|.::.:|::::.||.:.::. ...:|:.:|..|:.:
  Rat   244 CLSQLLDIMKSMRNLVKKYEP-PRSEEVAILKQKLER 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycCNP_476848.1 CYCLIN_CCNC_rpt1 40..146 CDD:410217 32/105 (30%)
CYCLIN_CCNC_rpt2 154..245 CDD:410218 24/105 (23%)
CcnhNP_443213.3 ccl1 2..308 CDD:129660 75/297 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 296..323
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5333
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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