DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycC and ccnl1b

DIOPT Version :10

Sequence 1:NP_476848.1 Gene:CycC / 41801 FlyBaseID:FBgn0004597 Length:267 Species:Drosophila melanogaster
Sequence 2:NP_956034.1 Gene:ccnl1b / 326088 ZFINID:ZDB-GENE-030131-4813 Length:498 Species:Danio rerio


Alignment Length:235 Identity:61/235 - (25%)
Similarity:104/235 - (44%) Gaps:38/235 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 IQVLGEQLKLRQQVIATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEEF------------ 100
            ||..|..|:|.|..:||..|.|:||:...|....:..::|..|:.||||:||.            
Zfish    70 IQSAGILLRLPQVAMATGQVIFQRFFFSKSFVKHNFEIVAMACVNLASKIEESPRRVRDVINVFH 134

  Fly   101 ----GVISNSRLISICQSAIKTKFSYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQ 161
                |....|..:.:.|:.|.||             |.:::.|..:|:.|..|:.|..|::.::.
Zfish   135 HLKQGKGKKSTPLILDQNYINTK-------------NQVIKAERRILKELGFC
VHVKHPHKIIVM 186

  Fly   162 LVQ--DMGQEDQLLTLSWRIVNDSLRTDVCLLYPPYQIAIACLQIACVILQ--KDATKQWFAELN 222
            .:|  :..:...|:..:|..:||:|||...:.:.|..||.||:.:|..:||  ..:...||....
Zfish   187 YLQVLECEKNQMLVQTAWNYMNDALRTSAFVRFEPETIACACIYLAARVLQIPLPSKPHWFLLFG 251

  Fly   223 VDLDKVQEIVRAIVNLYELWKDWKEKDEIQMLLSKIPKPK 262
            ...:.::||....:.||.     :||...:.|..::.|.|
Zfish   252 ATKEDIKEICINTMKLYS-----REKPHSEQLERQVEKRK 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycCNP_476848.1 CYCLIN_CCNC_rpt1 40..146 CDD:410217 30/113 (27%)
CYCLIN_CCNC_rpt2 154..245 CDD:410218 23/94 (24%)
ccnl1bNP_956034.1 CYCLIN_SF 20..174 CDD:477360 31/116 (27%)
Cyclin-like 1 68..169 29/111 (26%)
CYCLIN_CCNL1_rpt2 178..300 CDD:410295 28/114 (25%)
Cyclin-like 2 182..266 20/83 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 294..498
RS 366..396
Blue background indicates that the domain is not in the aligned region.

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