Protein Alignment CycC and Ccnl2

DIOPT Version :10

• Sequence 1: NP_476848.1
• Gene: CycC / 41801
• FlyBaseID: FBgn0004597
• Length: 267
• Species: Drosophila melanogaster
• Sequence 2: XP_006239606.1
• Gene: Ccnl2 / 298686
• RGDID: 1309149
• Length: 521
• Species: Rattus norvegicus
• Alignment Length: 231
• Identity: 66/231 - (28%)
• Similarity: 115/231 - (49%)
• Gaps: 27/231 - (11%)

  Fly    47 VIQVLGEQLKLRQQVIATATVYFKRF-----YARNSLKNIDPLLLAPTCILLASKVEEF-----G 101
            :||..|..|:|.|..:||..|.|:||     :.::|::::     :..|:.||||:||.     .
  Rat    82 LIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHV-----SMACVHLASKIEEAPRRIRD 141

  Fly   102 VIS-NSRLISICQSAIKTKFSYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQ- 164
            ||: ..||..:.:.  |........||:....|.|::.|..:|:.|..|:.|..|::.::..:|
  Rat   142 VINVFHRLRHLREK--KKPVPLVLDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQV 204

  Fly   165 -DMGQEDQLLTLSWRIVNDSLRTDVCLLYPPYQIAIACLQIACVILQKDATKQ--WFAELNVDLD 226
             :..:...|:..:|..:||||||||.:.:.|..||.||:.:|...|:.....:  ||.......:
  Rat   205 LECERNQHLVQTAWNYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEE 269

  Fly   227 KVQEIVRAIVNLYELWKDWKEKDEIQMLLSKIPKPK 262
            ::|||...|:.||.     ::|.::..|.|::.|.|
  Rat   270 EIQEICFKILQLYT-----RKKVDLTHLESEVEKRK 300

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CycC	NP_476848.1	CYCLIN_CCNC_rpt1	40..146	CDD:410217	31/109 (28%)
		CYCLIN_CCNC_rpt2	154..245	CDD:410218	27/94 (29%)
Ccnl2	XP_006239606.1	CYCLIN_CCNL2_rpt1	33..188	CDD:410293	32/112 (29%)
		CYCLIN_CCNL2_rpt2	193..315	CDD:410296	32/113 (28%)