DRSC/TRiP Functional Genomics Resources

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Protein Alignment UQCR-C1 and PMPCB

DIOPT Version :9

Sequence 1:NP_650401.1 Gene:UQCR-C1 / 41800 FlyBaseID:FBgn0038271 Length:470 Species:Drosophila melanogaster
Sequence 2:XP_005250774.1 Gene:PMPCB / 9512 HGNCID:9119 Length:508 Species:Homo sapiens


Alignment Length:480 Identity:317/480 - (66%)
Similarity:366/480 - (76%) Gaps:33/480 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RVLGVTQNM-------RSFMRGVDMIKRYKSAATLQKTLLNIPATQVTKLDNGLRVASEDSGAST 61
            |:.|.::::       ||...|.:   |.:|.....:.:||:|.|:||.|::||||||||||.||
Human    17 RLWGFSESLLIRGAAGRSLYFGEN---RLRSTQAATQVVLNVPETRVTCLESGLRVASEDSGLST 78

  Fly    62 ATVGLWIDAGSRSENEKNNGVAHFLEHMAFKGTAKRSQTDLELEVENLGAHLNAYTSREQTVFYA 126
            .|||||||||||.|||||||.||||||||||||.||||.|||||:||:||||||||||||||:||
Human    79 CTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYA 143

  Fly   127 KCLSKDVPKAVEILADIIQNSKLGEAEIARERSVILREMQEVESNLQEVVFDHLHATAYQGTPLG 191
            |..|||:|:||||||||||||.||||||.|||.||||||||||:||||||||:|||||||.|.||
Human   144 KAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALG 208

  Fly   192 QTILGPTKNIQSIGKADLTDYIQTHYKASRIVLAAAGGVKHDDLVKLA--------CSSLGGLEA 248
            :||||||:||:||.:.||.|||.||||..||||||||||.||:|:.||        |:..|  |.
Human   209 RTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLAKFHFGDSLCTHKG--EI 271

  Fly   249 SVLPAEVTPCRFTGSEVRVRDDSLPLAHVAIAVEGCGWTDQDNIPLMVANTLVGAWDRSQGGGAN 313
            ..||    ||:|||||:|||||.:||||:|||||..||...|.|.|||||||:|.||||.|||.|
Human   272 PALP----PCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMN 332

  Fly   314 NASNLARASAEDNLCHSFQSFNTCYKDTGLWGIYFVCDPLQCEDMLFNVQTEWMRLCTMVTEAEV 378
            .:|.||:.:...|||||||||||.|.||||||:|.||:.....|||..||.|||||||.|||:||
Human   333 LSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEV 397

  Fly   379 ERAKNLLKTNMLLQLDGTTPICEDIGRQILCYNRRIPLHELEQRIDAVSVGNVRDVAMKYIYDRC 443
            .||:|||||||||||||:||||||||||:||||||||:.|||.|||||:...:|:|..||||:|.
Human   398 ARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRS 462

  Fly   444 PAVAAVGPVENLPDYNRIRSSMY-W 467
            ||:||||       ||. ||.:: |
Human   463 PAIAAVG-------YNH-RSELHEW 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UQCR-C1NP_650401.1 PqqL 35..459 CDD:223685 305/431 (71%)
PMPCBXP_005250774.1 PqqL 46..469 CDD:223685 303/428 (71%)
Peptidase_M16 68..215 CDD:279066 125/146 (86%)
Peptidase_M16_C 220..404 CDD:282978 116/189 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165145628
Domainoid 1 1.000 251 1.000 Domainoid score I2106
eggNOG 1 0.900 - - E1_COG0612
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3160
Inparanoid 1 1.050 634 1.000 Inparanoid score I841
Isobase 1 0.950 - 0 Normalized mean entropy S617
OMA 1 1.010 - - QHG53495
OrthoDB 1 1.010 - - D287307at33208
OrthoFinder 1 1.000 - - FOG0001232
OrthoInspector 1 1.000 - - oto90348
orthoMCL 1 0.900 - - OOG6_100777
Panther 1 1.100 - - LDO PTHR11851
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R743
SonicParanoid 1 1.000 - - X964
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1716.750

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