DRSC/TRiP Functional Genomics Resources

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Protein Alignment UQCR-C1 and pmpcb

DIOPT Version :9

Sequence 1:NP_650401.1 Gene:UQCR-C1 / 41800 FlyBaseID:FBgn0038271 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001039103.1 Gene:pmpcb / 733923 XenbaseID:XB-GENE-999999 Length:479 Species:Xenopus tropicalis


Alignment Length:465 Identity:318/465 - (68%)
Similarity:369/465 - (79%) Gaps:3/465 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VLGVTQNMRSFMRGVDMIKRYKSAATLQKTLLNIPATQVTKLDNGLRVASEDSGASTATVGLWID 69
            :.|:.:..:....||   .|.:|...|.:.:||:|.|:||.|:|||||:|||||..|.|||||||
 Frog    17 IRGLVRKSQPIRYGV---SRNRSTQALTQAVLNVPETKVTTLENGLRVSSEDSGLLTCTVGLWID 78

  Fly    70 AGSRSENEKNNGVAHFLEHMAFKGTAKRSQTDLELEVENLGAHLNAYTSREQTVFYAKCLSKDVP 134
            ||||.||:.|||.||||||||||||..|||.|||||:||:||||||||||||||:|||..|||:|
 Frog    79 AGSRYENQMNNGTAHFLEHMAFKGTKNRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLP 143

  Fly   135 KAVEILADIIQNSKLGEAEIARERSVILREMQEVESNLQEVVFDHLHATAYQGTPLGQTILGPTK 199
            :||||||||||||.||||||.|||.||||||||||:||||||||:||||||..|.||:||||||:
 Frog   144 RAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYHNTALGRTILGPTE 208

  Fly   200 NIQSIGKADLTDYIQTHYKASRIVLAAAGGVKHDDLVKLACSSLGGLEASVLPAEVTPCRFTGSE 264
            ||:||.:.||.:||.||||..||||||||||.||:|:.||....|.|.::.....:.||.|||||
 Frog   209 NIKSINRNDLVEYITTHYKGPRIVLAAAGGVSHDELLHLAKFHFGNLPSTYEGETLPPCSFTGSE 273

  Fly   265 VRVRDDSLPLAHVAIAVEGCGWTDQDNIPLMVANTLVGAWDRSQGGGANNASNLARASAEDNLCH 329
            :|||||.:||||:|:|||..||:..|.|||||||||:|.||||.|||.|.:|.||:.:...||||
 Frog   274 IRVRDDKMPLAHIAVAVEAVGWSHPDTIPLMVANTLIGNWDRSFGGGVNLSSKLAQLTCHGNLCH 338

  Fly   330 SFQSFNTCYKDTGLWGIYFVCDPLQCEDMLFNVQTEWMRLCTMVTEAEVERAKNLLKTNMLLQLD 394
            |||||||||.||||||:|.||:|...|||:..||.||:||||.|||.||.|||||||||||||||
 Frog   339 SFQSFNTCYTDTGLWGLYMVCEPNTVEDMMHFVQREWIRLCTSVTENEVARAKNLLKTNMLLQLD 403

  Fly   395 GTTPICEDIGRQILCYNRRIPLHELEQRIDAVSVGNVRDVAMKYIYDRCPAVAAVGPVENLPDYN 459
            |:||||||||||:|||||||||.|||.|||.:|...:|:|..||||::.||||||||:..||||:
 Frog   404 GSTPICEDIGRQMLCYNRRIPLPELEARIDLISAETIREVCTKYIYNKSPAVAAVGPIGQLPDYD 468

  Fly   460 RIRSSMYWLR 469
            ||||.|||||
 Frog   469 RIRSGMYWLR 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UQCR-C1NP_650401.1 PqqL 35..459 CDD:223685 302/423 (71%)
pmpcbNP_001039103.1 PqqL 38..468 CDD:223685 303/429 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 241 1.000 Domainoid score I2212
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H3160
Inparanoid 1 1.050 614 1.000 Inparanoid score I886
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D287307at33208
OrthoFinder 1 1.000 - - FOG0001232
OrthoInspector 1 1.000 - - oto104154
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R743
SonicParanoid 1 1.000 - - X964
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.090

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