DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment UQCR-C1 and uqcrc2a

DIOPT Version :9

Sequence 1:NP_650401.1 Gene:UQCR-C1 / 41800 FlyBaseID:FBgn0038271 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001002657.2 Gene:uqcrc2a / 436930 ZFINID:ZDB-GENE-040718-405 Length:460 Species:Danio rerio


Alignment Length:469 Identity:121/469 - (25%)
Similarity:206/469 - (43%) Gaps:38/469 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 MRSFMRGVDMIKR--YKSAATLQKTL-------------LNIPATQVTKLDNGLRVASEDSGAST 61
            |.:..||...:.|  |.:||...|.|             |.....||:||.:||.|||.::.:..
Zfish     1 MMTGFRGFTHLSRRCYAAAARRNKALTEPLSHKSAAPPVLQPQDVQVSKLPSGLVVASLENYSPV 65

  Fly    62 ATVGLWIDAGSRSENEKNNGVAHFLEHMAFKGTAKRSQTDLELEVENLGAHLNAYTSREQTVFYA 126
            :.:|:::.||||.|..:|.||.|.|...|...|...|...:...:|.|||.|:..:|||..|:..
Zfish    66 SKIGVFVKAGSRYETAENLGVTHMLRLAANMTTKGASAFKICRSLEALGASLSVTSSREHMVYSL 130

  Fly   127 KCLSKDVPKAVEILADIIQNSKLGEAEIARERSVILREMQEVESNLQEVVFDHLHATAYQGTPLG 191
            ..|..|....:|.|.|:.........|:|.....:..:....|.:.|..|.:.||..||:.. |.
Zfish   131 DFLRDDFDGVIEYLVDVTTAPDFRPWELADLTPRVKIDKALAEQSPQIGVLEKLHEAAYKNA-LS 194

  Fly   192 QTILGPTKNIQSIGKADLTDYIQTHYKASRIVLAAAGGVKHDDLVKLACSSLGGLEASVLPAEVT 256
            .::..|...:..|....|..:...:|.::|:.|... ||.|..|..:.....|..:.:..|.  .
Zfish   195 NSLYCPDIMLGKISVDHLQQFFDNNYTSARMALVGL-GVSHAALKTVGERFFGSHKGAGAPG--A 256

  Fly   257 PCRFTGSEVRVRDDSLPLAHVAIAVEGCGWTDQDNIPLMVANTLVGAWDRSQGGGANNASNL--- 318
            ...:.|.|:||:... .|.|..:|.||......:.....|...::||....: .|:|.:|.|   
Zfish   257 KAVYRGGELRVQGTG-SLVHALLACEGAVTGSAEANAFSVLQRILGAGPHVK-RGSNISSKLSQG 319

  Fly   319 -ARASAEDNLCHSFQSFNTCYKDTGLWGIYFVCDPLQCEDMLFNVQTEWMRLCTMVTEA-----E 377
             |:|:|:.   ....:|:|.|.|:||:|:|.:.......:::.:...:    .|.|.|.     :
Zfish   320 IAKATAQP---FDATAFSTTYSDSGLFGLYIISQADSTREVISSAVAQ----VTAVAEGKLTTDD 377

  Fly   378 VERAKNLLKTNMLLQLDGTTPICEDIGRQILCYNRRIPLHELEQRIDAVSVGNVRDVAMKYIYDR 442
            :.||||.||.:.|:.|:.:..:.|::|.|:|..........:.|.||:|:..:|...|.:::..:
Zfish   378 LTRAKNQLKADYLMSLESSDVLLEELGVQLLNSGVYSSPQTVTQSIDSVTSSDVLKAARRFVEGQ 442

  Fly   443 CPAVAAVGPVENLP 456
             .::::.|.:||.|
Zfish   443 -KSMSSCGYLENTP 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UQCR-C1NP_650401.1 PqqL 35..459 CDD:223685 113/444 (25%)
uqcrc2aNP_001002657.2 PqqL 33..443 CDD:223685 108/423 (26%)
Peptidase_M16 55..201 CDD:279066 41/146 (28%)
Peptidase_M16_C 206..385 CDD:282978 45/190 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0612
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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