DRSC/TRiP Functional Genomics Resources

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Protein Alignment UQCR-C1 and uqcrc2b

DIOPT Version :9

Sequence 1:NP_650401.1 Gene:UQCR-C1 / 41800 FlyBaseID:FBgn0038271 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001001589.1 Gene:uqcrc2b / 322549 ZFINID:ZDB-GENE-030131-1269 Length:454 Species:Danio rerio


Alignment Length:463 Identity:114/463 - (24%)
Similarity:204/463 - (44%) Gaps:29/463 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 MRGVDMIKRYKSAATLQK---------TLLNIP-ATQVTKLDNGLRVASEDSGASTATVGLWIDA 70
            :||:..:.|...||...:         .|..:| ..|||||.:||.:||.::.:..:.:|:.:.|
Zfish     4 IRGISQLSRRLYAAQAARKVDFAAAGEPLKFVPQEVQVTKLPSGLVIASLENYSPASRIGVLVRA 68

  Fly    71 GSRSENEKNNGVAHFLEHMAFKGTAKRSQTDLELEVENLGAHLNAYTSREQTVFYAKCLSKDVPK 135
            |||.|...|.||.|.|...|...|...|...:...||.:|..|:..:|||...:...||...:..
Zfish    69 GSRYETTDNLGVTHLLRLAASLTTKGASAFRICRGVEAVGGSLSVSSSRETMSYTVDCLRDHIDT 133

  Fly   136 AVEILADIIQNSKLGEAEIARERSVILREMQEVESNLQEVVFDHLHATAYQGTPLGQTILGPTKN 200
            .:|.|.::....:....|::.....:..:.:..:...|..|.:.|||.||:.. |..::..|...
Zfish   134 VMEYLINVTTAPEFRAWEVSDLTGRVNLDKKLAKQTPQIGVIEDLHAAAYKNA-LSNSLYCPDFK 197

  Fly   201 IQSIGKADLTDYIQTHYKASRIVLAAAGGVKHDDLVKLA------CSSLGGLEASVLPAEVTPCR 259
            |..|....:..::|.::.::|:.|... ||.||.|.::.      .|..|.:.:..|        
Zfish   198 IGQITTEQMHTFVQNNFTSARMALVGL-GVDHDMLKQVGEQFLNIRSGAGTVGSKAL-------- 253

  Fly   260 FTGSEVRVRDDSLPLAHVAIAVEGCGWTDQDNIPLMVANTLVGAWDRSQGGGANNASNLARASAE 324
            :.|.||| ......|.|..:|:||...|..:.....|...::||..|.:.|.::.::.....|..
Zfish   254 YRGGEVR-HQTGAGLVHALVAIEGASATSAEATAFSVLQHVLGAGPRVKRGSSSTSTLTQAISKV 317

  Fly   325 DNLCHSFQSFNTCYKDTGLWGIYFVCDPLQCEDMLFNVQTEWMRLCT-MVTEAEVERAKNLLKTN 388
            ..|.....:||..|.|:||:|:|.:|......|::.....:...:.. .:..|::.:|||.|..:
Zfish   318 TALPFDASAFNANYTDSGLFGLYTICQANAVNDVIKAAVGQVNAIAQGNLAAADLSKAKNQLTAD 382

  Fly   389 MLLQLDGTTPICEDIGRQILCYNRRIPLHELEQRIDAVSVGNVRDVAMKYIYDRCPAVAAVGPVE 453
            .|:.::.:..:.:.||..:|..........:.|:|:|||..:|.:||.|::..: ..:|:.|.:.
Zfish   383 YLMSIESSEGLMDVIGTHVLSEGTYHTPEAVTQKINAVSSADVVNVAKKFMSGK-KTMASSGNLV 446

  Fly   454 NLPDYNRI 461
            |.|..:.|
Zfish   447 NTPFVDEI 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UQCR-C1NP_650401.1 PqqL 35..459 CDD:223685 108/431 (25%)
uqcrc2bNP_001001589.1 PqqL 39..432 CDD:223685 101/403 (25%)
Peptidase_M16 49..195 CDD:279066 36/146 (25%)
Peptidase_M16_C 201..379 CDD:282978 43/187 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0612
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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