DRSC/TRiP Functional Genomics Resources

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Protein Alignment UQCR-C1 and Uqcrc1

DIOPT Version :9

Sequence 1:NP_650401.1 Gene:UQCR-C1 / 41800 FlyBaseID:FBgn0038271 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001004250.1 Gene:Uqcrc1 / 301011 RGDID:1303314 Length:480 Species:Rattus norvegicus


Alignment Length:448 Identity:256/448 - (57%)
Similarity:328/448 - (73%) Gaps:5/448 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KSAATLQKTLLNIPATQVTKLDNGLRVASEDSGASTATVGLWIDAGSRSENEKNNGVAHFLEHMA 90
            :..||..:.|.::|.|||:.||||||||||.|...|.|||:|||.|||.|.|||||..:||||:|
  Rat    33 RGTATFVQALQSVPETQVSVLDNGLRVASEQSSHPTCTVGVWIDVGSRYETEKNNGAGYFLEHLA 97

  Fly    91 FKGTAKRSQTDLELEVENLGAHLNAYTSREQTVFYAKCLSKDVPKAVEILADIIQNSKLGEAEIA 155
            ||||..|....||.|||::|||||||::||.|.:..|.||||:||.||:||||:||..|.:::|.
  Rat    98 FKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNISLEDSQIE 162

  Fly   156 RERSVILREMQEVESNLQEVVFDHLHATAYQGTPLGQTILGPTKNIQSIGKADLTDYIQTHYKAS 220
            :||.||||||||.::::|.||||:|||||:|||||.|.:.||::|::.:.:.|||||:..||||.
  Rat   163 KERDVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLSRHYKAP 227

  Fly   221 RIVLAAAGGVKHDDLVKLACSSLGGL----EASVLPAEVTPCRFTGSEVRVRDDSLPLAHVAIAV 281
            |:||||||||||..|:.||......:    |...:|: :|||||||||:|.|||:||||||||||
  Rat   228 RMVLAAAGGVKHQQLLDLAQDHFSSVSQVYEEDAVPS-ITPCRFTGSEIRHRDDALPLAHVAIAV 291

  Fly   282 EGCGWTDQDNIPLMVANTLVGAWDRSQGGGANNASNLARASAEDNLCHSFQSFNTCYKDTGLWGI 346
            ||.||.:.||:.|.|||.::|.:|.:.|||.:.:|.||..:..:.||.|||:||..|.:|||.|.
  Rat   292 EGPGWANPDNVALQVANAIIGHYDCTYGGGVHLSSPLASVAVANKLCQSFQTFNISYSETGLLGA 356

  Fly   347 YFVCDPLQCEDMLFNVQTEWMRLCTMVTEAEVERAKNLLKTNMLLQLDGTTPICEDIGRQILCYN 411
            :||||.:..:||:|.:|.:||||||..||:||.|.||:|:..::..||||||:||||||.:|.|.
  Rat   357 HFVCDAMSIDDMIFFLQGQWMRLCTSATESEVTRGKNILRNALISHLDGTTPVCEDIGRSLLTYG 421

  Fly   412 RRIPLHELEQRIDAVSVGNVRDVAMKYIYDRCPAVAAVGPVENLPDYNRIRSSMYWLR 469
            |||||.|.|.||:.|....||:|..||.||:|||||..||:|.|.|||||||.|:|||
  Rat   422 RRIPLAEWESRIEEVDAQMVREVCSKYFYDQCPAVAGYGPIEQLSDYNRIRSGMFWLR 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UQCR-C1NP_650401.1 PqqL 35..459 CDD:223685 244/427 (57%)
Uqcrc1NP_001004250.1 PqqL 46..469 CDD:223685 243/423 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0612
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53495
OrthoDB 1 1.010 - - D287307at33208
OrthoFinder 1 1.000 - - FOG0001232
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100777
Panther 1 1.100 - - O PTHR11851
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X964
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.790

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