DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rrp6 and AT2G32415

DIOPT Version :9

Sequence 1:NP_001097795.1 Gene:Rrp6 / 41798 FlyBaseID:FBgn0038269 Length:900 Species:Drosophila melanogaster
Sequence 2:NP_001323729.1 Gene:AT2G32415 / 817803 AraportID:AT2G32415 Length:892 Species:Arabidopsis thaliana


Alignment Length:803 Identity:198/803 - (24%)
Similarity:320/803 - (39%) Gaps:175/803 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 VRPQTQFREPVDNSAQNPFVPRLKEKPNSLKPLALLPEYDDAGNVQSYLHPYEFEL-LKFQPPEE 253
            ::||..|:..:.:::.:.|           |.|.|:.....:....|..||||.|: :..:.|:.
plant    49 LKPQFGFKRVLADNSYSEF-----------KHLKLVDASSSSLEKPSNGHPYETEITVLLENPQI 102

  Fly   254 QFQKQKPVLPALMAETELMVVDTVEKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRS 318
            :|...:......|:::.:. |:|..:||:..|.|.:....|:|.|.||.|:|:|.|.|:|:||..
plant   103 EFGFLRGECSLEMSDSYVW-VETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHE 166

  Fly   319 KDYIFDTLILRDDMHILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMAR 383
            :|::.||:.|.|.|.||..|.:||...|:.||||.|:.|||||..:|:||||||.:|.:.|:..:
plant   167 EDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQ 231

  Fly   384 LSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQHAEPG-- 446
            .||||||:....:..:|.||..|||.|||.:::|.|||.|.|:|:|:...:|.:|.|...|..  
plant   232 RSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATEDSSS 296

  Fly   447 ------LLGSVYQQSTDVCKKRYNKP----------------HIGPESHLDLVRKTKRSFDNRQL 489
                  .|....::|...|.:.|.|.                |:  ..|.|   |:..|.:..:|
plant   297 PDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHL--NGHGD---KSNISLNAEEL 356

  Fly   490 YALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHTLHQI 554
              :|.:..|||...|..|||..|||.:              |.|:......|....:...|:..|
plant   357 --VRKLCAWRDLMGRIHDESTRYVLSD--------------QAIVGLSCKQPTTTEEIYDTIAHI 405

  Fly   555 VLKARDQPLVKPILEAHSSTQAALPPSTKDFSSKLYCPH-------DFSQLEEIRDDLPTLLKR- 611
            .|.....|.:.      ||.|:..|         :.|.|       ...:|.::.|.||.:||: 
plant   406 DLATESSPSLS------SSVQSPYP---------VICSHLDDIYKMILDKLAKLDDLLPVVLKKC 455

  Fly   612 --NSTTGKLEVPNKEEVAKVDPTLAAPAMALFEKQSKPTQEEEQRWAH--LRKESQTMRMPYKRY 672
              .:.|..:.|.|...:......|::        .|.|.|...:.:..  .||.|:.:.:  |::
plant   456 LGTNGTCPISVFNYSLLVNFKTKLSS--------HSAPKQNGHKNFKQQFTRKASRELFV--KKF 510

  Fly   673 LAILPLM--VQLKADQLARERSELQKRQL-----CPAAPTVEQN---IKLEAHAIGKEDDD---- 723
            ....|:.  .::.|:. .|......||:|     ...|..||:|   |.|.....|:.:|:    
plant   511 SCKAPVYHNCRIYAND-GRLLCYCDKRKLEWYLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDF 574

  Fly   724 --------------------------MYSVPLKEQLK--RKHPQANVKTD-PEQQPTASKRPRKD 759
                                      .|.|...|.||  |.|....:..| .|....|::|.:|.
plant   575 YIQTKRNICVGCGEGKHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQ 639

  Fly   760 ENSQTKPPVKIEPVEKVQQALGESDDEVVEVPIERQAT---EPPKPSPAQNNRKQKKNQFQRGFK 821
            ..::...|:.:..|...::|.|.|.      .:|.::|   |....||....        .....
plant   640 IATEFGIPLFVRRVLDSKEAQGTSS------LVEDESTGDSEDAGVSPLHLR--------SAAMA 690

  Fly   822 AKNRGNHPQSSS-----QQVPQHKGTGNFDYKNVDFRQFKG-------GAQRARGTEIKQ--QIR 872
            ....||...||.     |.|..:.|..:...::::.....|       ..:|.:|...|.  ::.
plant   691 LLRHGNRMPSSRREELLQTVKMYYGGRDLSEEDLEKALLIGLSPHERRKLERKKGVSFKHSAEVA 755

  Fly   873 GKNRPNNRNN-----KQFNKLFT 890
            |.::..:.||     ..|.|:.|
plant   756 GMDKQEDENNDGEALADFEKIMT 778

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rrp6NP_001097795.1 PMC2NT 55..125 CDD:285328
Rrp6p_like_exo 268..456 CDD:99850 78/195 (40%)
rnd 273..622 CDD:130455 120/382 (31%)
HRDC 485..565 CDD:128635 19/79 (24%)
MSA_2 735..>833 CDD:144541 20/101 (20%)
AT2G32415NP_001323729.1 Rrp6p_like_exo 115..309 CDD:99850 79/194 (41%)
HRDC 354..>397 CDD:278967 15/58 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0349
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12124
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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