DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rrp6 and crn-3

DIOPT Version :9

Sequence 1:NP_001097795.1 Gene:Rrp6 / 41798 FlyBaseID:FBgn0038269 Length:900 Species:Drosophila melanogaster
Sequence 2:NP_001379075.1 Gene:crn-3 / 3565889 WormBaseID:WBGene00000796 Length:876 Species:Caenorhabditis elegans


Alignment Length:967 Identity:275/967 - (28%)
Similarity:440/967 - (45%) Gaps:179/967 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ESAQADQPPKKSASED-------------VEAFTNKGFKNAIAATKAANAFPQ-GTARALYLSYP 65
            |.:..|:..|:|..|:             ||..    .:|.....:.:|..|: |....||.|||
 Worm     4 EESMPDEEQKQSEEEEEMIRKRTLAMRKKVEEI----MRNGAGLVRESNGLPKAGADYELYNSYP 64

  Fly    66 GYARVMEDLTQRVVALIGNVLHSKDIKGDIKKRQPEEQFEMVQECNDVLFERITTNLDIKGGLRR 130
            .:...|:...||:.||:..|  :|.|  ....|.|                      |:...:..
 Worm    65 TFNTFMKRSEQRLNALMNKV--TKSI--GCAMRVP----------------------DVGSSVEH 103

  Fly   131 NTQQVVEAQVDVMSSSTSIEPAVASPQ-------TQGTPKAGSWNRTTGTPQRSMVSARLFT--- 185
            .|:.|:|||.::...:.::..|:...:       .:...||...||.|    .:.|||.:.|   
 Worm   104 YTECVIEAQDNIAERAATLHEALKKAELDEIVKVPEFITKAAPTNRKT----EAEVSAAMRTFSA 164

  Fly   186 -----------------AKNIV--RPQTQFREPVDNSAQNPFVPRLKEKPNSL-KPLALLPEYDD 230
                             |:.:|  :||..:....||| |.||..:|..|.::: |...::...||
 Worm   165 NIGTVLAEKFRERREEAAQMVVLEKPQKTYNISSDNS-QAPFSSKLTVKHHAIEKRTGIVLHDDD 228

  Fly   231 AGNVQSYL---------HPYEFELLKFQPPEEQFQKQKPVLPALMAETELMVVDTVEKLKQALEE 286
            ....:.::         |||..|:|.|:.||.|.:..:.:....:.:|.|.::||.|||:...:.
 Worm   229 ESGRRDWISAETETEEEHPYIAEILHFKVPEAQLKSAECLKFTALKDTPLTMIDTKEKLEALTKT 293

  Fly   287 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTLILRDDMHILNLVLTDPKKLKILHGA 351
            |....:.|:|:|||..|:::|:|||:|:|||.:|:|.|...:.|.:.:||....:|:.||:.||:
 Worm   294 LNSVKEFAVDLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVGMLNEPFANPRILKVFHGS 358

  Fly   352 DLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQL 416
            |.|:.|||||..:::||:|||:.|.|.|...:.|||||...:.|:.:||..||||||.|||...:
 Worm   359 DSDVLWLQRDYGVHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAM 423

  Fly   417 VDYARQDTHFLIYVYGRMTNDLLQQHAEPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTK 481
            ::|||:|||:|:|.|..:...||:|..:.  |.:||.:|:|:|.|.|.||...|:.:|..: |.:
 Worm   424 INYAREDTHYLLYSYDMLREQLLKQDTKD--LANVYSESSDLCIKVYKKPVFNPKGYLTEI-KFR 485

  Fly   482 RSFDNRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQ 546
            .:.:.||.|||..:|:|||..||:||||..:||||||||.::|:|||::.||.|||||:|..|:|
 Worm   486 FTLNTRQDYALTHLFKWRDVVARAEDESPHFVLPNHMMLSLSETLPRDVGGIYACCNPLPYFVKQ 550

  Fly   547 QLHTLHQIVLKARDQPLVKPILEAHSSTQA----ALPPSTKD-FSSKLYCPHDFS--QLEEIRDD 604
            :...:.:|:::|||..|.|..|.|.....|    .:...|.| .:|.|....|||  :.:|.|.:
 Worm   551 RTGDILKIIVEARDVKLEKVGLSAKERNDAQEARGVMNDTMDHITSVLKSKIDFSHTRFDEERGE 615

  Fly   605 LPTLLKRNSTTGKLEV-PNKEEVAKVDPTLAAPAMALFEKQSKPTQEEEQRWAHLRKESQTMRMP 668
            :  .:.:......:|: .:||.:..|..|...|::.......|..:.:.|:...|..|......|
 Worm   616 I--YIDKTDEGMDIELKDHKESLLSVLQTAEIPSVETMIVVEKGKKSDNQKVKKLLNELDKFVTP 678

  Fly   669 YKRYLAILPLMVQLKADQLARERSELQKRQLCPAAPTVEQNIKLEAHAIGKEDDDMYSVPLKEQL 733
            ::.|    .:|:..|..|...||.|.:::             |||...:.|   .|:|       
 Worm   679 FECY----QMMMITKEKQEEEERKEAERK-------------KLEEGDLPK---TMFS------- 716

  Fly   734 KRKHPQANVKTDPE------QQPTASKRPRKDENSQTKPPVKIEPVEKVQQALGESDDEVVEVPI 792
               |..|.:...||      ...|....|  |:.::.|.|   ||                 .|:
 Worm   717 ---HHDAPINRKPEFDAKLLNVDTLKLVP--DDPNKPKDP---EP-----------------SPM 756

  Fly   793 ERQATEPP--KPSPAQNNRKQKKNQFQRGFKAKNRGNH-----PQSSSQQVPQHKGTG------N 844
            |..::||.  .||...:::...|...:|...|..|...     .:|||...|:.|.:.      :
 Worm   757 EESSSEPQIFDPSRFTDDQLLSKKAMKRKRDAARRNIDVSVVLGESSSSSDPKKKKSDDDAPVED 821

  Fly   845 FDYKNVDFRQFKGGAQRARGTEI-----KQQIRGKNRPNNRNNKQFNKLFTFSNVRK 896
            |||:..|...|:... |....:.     |.:::.|.:.|....|..|:..|. |.:|
 Worm   822 FDYEKADSSAFEKPV-RDNNADFDPFHQKYRLKNKTKKNMAMKKSSNRQGTI-NYKK 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rrp6NP_001097795.1 PMC2NT 55..125 CDD:285328 17/69 (25%)
Rrp6p_like_exo 268..456 CDD:99850 80/187 (43%)
rnd 273..622 CDD:130455 144/356 (40%)
HRDC 485..565 CDD:128635 42/79 (53%)
MSA_2 735..>833 CDD:144541 22/110 (20%)
crn-3NP_001379075.1 PMC2NT 44..134 CDD:400418 25/115 (22%)
Rrp6p_like_exo 274..466 CDD:99850 83/193 (43%)
HRDC 489..569 CDD:128635 42/79 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162593
Domainoid 1 1.000 166 1.000 Domainoid score I2363
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H135909
Inparanoid 1 1.050 327 1.000 Inparanoid score I1459
Isobase 1 0.950 - 0 Normalized mean entropy S2387
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003372
OrthoInspector 1 1.000 - - oto20776
orthoMCL 1 0.900 - - OOG6_101473
Panther 1 1.100 - - LDO PTHR12124
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1224
SonicParanoid 1 1.000 - - X2726
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.870

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