DRSC/TRiP Functional Genomics Resources

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Protein Alignment smp-30 and yellow-d

DIOPT Version :9

Sequence 1:NP_001262580.1 Gene:smp-30 / 41786 FlyBaseID:FBgn0038257 Length:306 Species:Drosophila melanogaster
Sequence 2:NP_523820.2 Gene:yellow-d / 37703 FlyBaseID:FBgn0041712 Length:432 Species:Drosophila melanogaster


Alignment Length:139 Identity:28/139 - (20%)
Similarity:44/139 - (31%) Gaps:37/139 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 YGGTMADSGDIFTQWKGE---LYSWQAGGQPNAIRSKVGISNGLAWDVKAKKFYFID-----TNN 181
            |.|.:.......|.|:.|   :|       |:....|..|:        .:.||.:|     .|:
  Fly   220 YHGLVVYDHQAQTSWRAENRFMY-------PDPDYGKHTIA--------GESFYLMDGMFALNND 269

  Fly   182 HEVLAYDYNQSTGAVSNPKVIFDLRKIRPEGP-LFPD-------------GMTVDTDGNIYVATF 232
            ...|.:....|....|.|....:.::....|| ..|:             ...:|...|:|..||
  Fly   270 KRNLYFHPLASASEYSVPLSALNRQQNWANGPEALPEEFRLLGRRRSECAASAIDGRNNVYCVTF 334

  Fly   233 NGGTVFKVN 241
            |...:|..|
  Fly   335 NPVKLFVWN 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smp-30NP_001262580.1 SGL 18..277 CDD:285626 28/139 (20%)
NHL 168..>248 CDD:302697 19/93 (20%)
NHL repeat 168..208 CDD:271320 8/44 (18%)
yellow-dNP_523820.2 MRJP 133..413 CDD:281074 28/139 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3386
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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