DRSC/TRiP Functional Genomics Resources

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Protein Alignment smp-30 and yellow-f

DIOPT Version :10

Sequence 1:NP_001262580.1 Gene:smp-30 / 41786 FlyBaseID:FBgn0038257 Length:306 Species:Drosophila melanogaster
Sequence 2:XP_061501916.1 Gene:yellow-f / 1274469 VectorBaseID:AGAMI1_010614 Length:428 Species:Anopheles gambiae


Alignment Length:245 Identity:49/245 - (20%)
Similarity:90/245 - (36%) Gaps:65/245 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VPDSYAALGEG-PHWDVD-------RQSLYYVDLESAGINRYDFKQNKVYRAKIEGEIFASFILP 67
            :|......|.| |:.:||       |...|..|.|...:..|...:.:::|  .|...| ||   
Mosquito   186 IPPEMVEFGYGIPNIEVDVDDRDCGRAYAYIPDYEWRRLYVYGLTEGRMWR--FEHNYF-SF--- 244

  Fly    68 VENKP---------QEFAVGCGLRTVIV--QWDGVSAVAKVTRTLF-----EVQPDLKENRL--N 114
               :|         |:|....|:.:|.|  :|:..:|    .||::     .|......||:  |
Mosquito   245 ---EPRYGDFNVAGQQFTWYDGIFSVAVGGRWENSAA----ERTVYLHAMASVSEIAVSNRILQN 302

  Fly   115 DAKTDPNGRFYGGTMADSGDIFTQWKGELYSWQAGGQPNAIRSKVGISNGLAWDVKAKKFYFIDT 179
            :.........||......|              |.| ||.      .|:..|:|.:....::.:.
Mosquito   303 ETMAQLGSGAYGRAFHHLG--------------ARG-PNT------QSSSHAYDPRTGVLFYAEI 346

  Fly   180 NNHEVLAYDYNQSTGAVSNPKVIFDLRKIRPEGPLFPDGMTVDTDGNIYV 229
            |.:.:..::.::.....::..|..|     .|..::|..:.:|:||:::|
Mosquito   347 NRNAIGCWNTHKQFTPENHGIVHLD-----NEEMIYPADLRIDSDGDLWV 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smp-30NP_001262580.1 SGL 18..277 CDD:462480 48/238 (20%)
yellow-fXP_061501916.1 None

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