DRSC/TRiP Functional Genomics Resources

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Protein Alignment eff and ubc-1

DIOPT Version :10

Sequence 1:NP_731941.1 Gene:eff / 41785 FlyBaseID:FBgn0011217 Length:147 Species:Drosophila melanogaster
Sequence 2:NP_001379774.1 Gene:ubc-1 / 177170 WormBaseID:WBGene00006701 Length:192 Species:Caenorhabditis elegans


Alignment Length:137 Identity:54/137 - (39%)
Similarity:92/137 - (67%) Gaps:0/137 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVA 68
            :|:.::.:.|..||||..|..|..|::..|:|.|.||.::|::.|.|.|::.|..:||.|||.|.
 Worm     7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVK 71

  Fly    69 FTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREK 133
            |.::::|||:.::||||||||:::|||...::.:|.||.|||.:|||:.|.....|::|:.:|.:
 Worm    72 FISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRRE 136

  Fly   134 YNELARE 140
            |.:..::
 Worm   137 YEKRVQQ 143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
effNP_731941.1 UBCc_UBE2D 3..145 CDD:467412 54/137 (39%)
ubc-1NP_001379774.1 UBCc_UBE2A_2B 3..145 CDD:467410 54/137 (39%)

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