DRSC/TRiP Functional Genomics Resources

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Protein Alignment kibra and Herc4

DIOPT Version :9

Sequence 1:NP_001034055.1 Gene:kibra / 41783 FlyBaseID:FBgn0262127 Length:1288 Species:Drosophila melanogaster
Sequence 2:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster


Alignment Length:448 Identity:82/448 - (18%)
Similarity:149/448 - (33%) Gaps:159/448 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 LSAAQDQLENKREMFDVKQQRLLWAQEEYNHLKLAASRSSLCSSSSSMSRHDPELLRADLMLARE 212
            |.|||...:|.|.:.:...::::|     :::......|.:||.:      |.|.:|..|:|   
  Fly   474 LKAAQLAFDNLRAVENESIRQVIW-----DNITKELVGSLVCSPA------DVESMRLYLLL--- 524

  Fly   213 RVHQLKQELTHITNDISYTERGMNTLYSVGEKINAR-------------------ENGCYDIAEV 258
               .|..|..:..:..|......|.::.:.|  |.|                   :|..:.:  :
  Fly   525 ---PLYHEFVNSKHYKSLQVPFANAIFKLAE--NPRKVLNKWLAQTPAEYFEHLVQNFLHVV--I 582

  Fly   259 HAI---------------REEMLKVHKSLVSGEKVREELMRSLVQIKNE---------------- 292
            |.|               |:::|..:..|    ::..:||::|.||.||                
  Fly   583 HIISFKMGLAAASPSAERRQQLLPYNTEL----EIILKLMKTLCQINNERHDRLNYQIFYWPDLS 643

  Fly   293 ----LGRQQISEENSDLASPFDRVCVASQTDLCGSSGENLNGGARFAEMAKTKWQYAEWRKHIKK 353
                :.::.:....:|.|..|: :|               |....|.:.|||....|:       
  Fly   644 DYADVQQEYVKWIMADTARDFN-IC---------------NYSFIFDQSAKTALLQAD------- 685

  Fly   354 LQQQLADHVERIEPGQLESD--------KDRILLIQEKEKLLNDLNSISLKSRSEEEKRVIHQTR 410
              |.|..|........:...        ...|:|...:|.|:.|    ||:           :.:
  Fly   686 --QALQMHSAMANAATMAFSFFNYGMPISQFIVLNVTRENLVQD----SLR-----------ELQ 733

  Fly   411 HKLEEDLKEAYEANNTCVANRLRFHEEKQ-------------LLLDKLQEALKSTKLLEERLKSF 462
            |..:.|||:..         :::||.|:.             ||.|.|.......|..|:....:
  Fly   734 HYSQSDLKKPL---------KIKFHGEEAEDAGGVRKEFFMLLLKDLLDPKYGMFKEYEQSRLLW 789

  Fly   463 SSESTFSISSGSSLGSLSTASSKSALSFTDIYIDPF-------AVDSPIDVVDLRRRS 513
            .::.||...:...|  :......:..:||.|.: ||       .:..|:|:.|||:.|
  Fly   790 FADLTFETENMYFL--IGVLCGLAIYNFTIINL-PFPLALFKKLLGKPVDLSDLRQLS 844

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kibraNP_001034055.1 WW 57..87 CDD:238122
WW 103..132 CDD:278809
C2_Kibra 693..813 CDD:176062
Herc4NP_001261249.1 RCC1 6..55 CDD:278826
RCC1 59..110 CDD:278826
RCC1 114..163 CDD:278826
RCC1 167..218 CDD:278826
RCC1 221..270 CDD:278826
RCC1 273..322 CDD:278826
RCC1_2 309..339 CDD:290274
RCC1 327..390 CDD:278826
HECTc 715..1060 CDD:238033 34/157 (22%)
HECTc 739..1059 CDD:214523 26/118 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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