DRSC/TRiP Functional Genomics Resources

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Protein Alignment kibra and herc5.4

DIOPT Version :9

Sequence 1:NP_001034055.1 Gene:kibra / 41783 FlyBaseID:FBgn0262127 Length:1288 Species:Drosophila melanogaster
Sequence 2:XP_005160166.1 Gene:herc5.4 / 100148091 ZFINID:ZDB-GENE-090311-7 Length:995 Species:Danio rerio


Alignment Length:569 Identity:121/569 - (21%)
Similarity:189/569 - (33%) Gaps:182/569 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 GEKVREELMRSLVQIKNELGRQQISEENSDLASPFDRVCVASQT-DLCGSSGENLNGGARFAEMA 338
            |.:|||..  .||:      .:|:...|..:     :.|.:|.. |:  |:|::..|..|     
Zfish     6 GAQVREGF--GLVK------PEQVRHGNWGI-----KFCPSSAVQDI--SAGKSCIGFIR----- 50

  Fly   339 KTKWQYAEWRKHIKKLQQQLADHVERIEPGQLESDKDR---------ILLIQEKEKLLNDLNSIS 394
                   |.:..:.:|..:.||  |::||.||::::.|         :||..:.:.|:.|.:::.
Zfish    51 -------EGKVSVLRLHNEDAD--EKLEPLQLQNERIRSIVCGEAGAVLLADDGKVLIMDQSTVC 106

  Fly   395 LKSRSEEEKRVIH-----QTRHKLEEDLKEAYEANNTCVANRLRFHEEKQLLLDKLQEALKSTKL 454
            ...:|.|.::||.     |....|..|.:......||          ..||.|.|.|...:|.:.
Zfish   107 RPLKSLENRQVIQIACGDQHSMALSNDGQLFVWGENT----------HGQLGLRKEQAGTQSPQH 161

  Fly   455 LEER------------------------------------------------LKSFSSESTFSIS 471
            |:..                                                :||...:.|.|||
Zfish   162 LQSLCEIPVAQISAGGNHSFVLSLSGVVFGWGSNSAGQLGLGDTKDRFVPTIVKSLCGKKTVSIS 226

  Fly   472 SGSSLGSLSTASSKSALSFTDIYIDPFAVDSPIDVVDLRRRSQRLFQQHQQQRLHPVHPVLQQQ- 535
            .|   |..:...||....||      |....   ...|...|  |..:|        ||.|..: 
Zfish   227 CG---GEHTATLSKGGTVFT------FGSGG---FGQLGHNS--LKDEH--------HPRLIAEL 269

  Fly   536 ---QSAEVTLSPRSSLSMETPPASPMKYNAGADQTPQALKEEPTYANALPAPPAYTAPPPVPISG 597
               :.::||.....:|..|  .:|.:.|:.|.....|....|....:.           |:|:  
Zfish   270 WGSKVSQVTCGRHHTLVFE--ESSKLIYSFGCGMQGQLGNGEQVKQSV-----------PLPV-- 319

  Fly   598 VRARPYDLDSTVLDCMMLEAKLQKLNMGTPLNLAVAPLSP--ISEKP------SLLDLPQEMLSR 654
                       :|.....|..::||..|...:.|:...:|  .||||      .:|.|...|:.|
Zfish   320 -----------LLPTECTEFTMEKLITGEHHSFALFFKNPGNESEKPKSGSNGGILTLNDRMIDR 373

  Fly   655 SSSTS----------NTRSVSAAVSNESVAGDS--GVFEASRAH------LPRKELAQVQIGLKY 701
            ..|.|          ||...|||..|.|....|  ..::.|..|      |.:...|:: ...|.
Zfish   374 WVSESDPWPTVKNEINTVFSSAASLNGSFLKTSRDEHYQTSVEHCGLDFDLVKTSFAKL-FASKS 437

  Fly   702 LKQEGVLVVSLERANNLLALWTASADNSQVYLRAALLPNSLTSIRTKAL 750
            |..|.|.||......:|....| ..:..::||....|.|.|...|||.:
Zfish   438 LISEVVKVVQQTLLPSLNPNPT-GVEALRLYLLLPELINGLKKQRTKLI 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kibraNP_001034055.1 WW 57..87 CDD:238122
WW 103..132 CDD:278809
C2_Kibra 693..813 CDD:176062 17/58 (29%)
herc5.4XP_005160166.1 RCC1_2 117..146 CDD:290274 7/38 (18%)
RCC1 133..183 CDD:278826 10/59 (17%)
RCC1 186..235 CDD:278826 8/51 (16%)
RCC1 239..286 CDD:278826 12/65 (18%)
RCC1 294..343 CDD:278826 11/72 (15%)
HECTc 658..993 CDD:294058
HECTc 682..992 CDD:214523
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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