Protein Alignment Rad17 and RfC3

DIOPT Version :10

• Sequence 1: NP_650382.3
• Gene: Rad17 / 41779
• FlyBaseID: FBgn0025808
• Length: 535
• Species: Drosophila melanogaster
• Sequence 2: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Alignment Length: 361
• Identity: 71/361 - (19%)
• Similarity: 129/361 - (35%)
• Gaps: 103/361 - (28%)

  Fly    83 PEVKENWMESFEPATSDDLAVHPKKVGELRDWLRHCEAVRKKFPAQMCLLTGPTGAGKTTTLRVL 147
            |.|:..|:|.:.|:..|||..|.:.:..:..::.     ||:.|  ..|..||.|.|||:|:...
  Fly     7 PAVRMPWVEKYRPSGLDDLISHEEIISTITRFIS-----RKQLP--HLLFYGPPGTGKTSTILAC 64

  Fly   148 AKEFGYQLQEW------INPIDCEVVNTLGDQTTG-ASYVGSHLEAFKSFLLRASRYKSLLDSQN 205
            |::. |..|::      :|..|...:..:..|... ||......:.||
  Fly    65 ARQL-YSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFK----------------- 111

  Fly   206 KRLLLVEDFPNVLLSDKEVNFEELLEEYTAYGK-----SPLVFIVADAKSRGLNISYR-LFPDQL 264
               |::.|..:.:.:|.:.....::|:||...:     :.|..|:...:||.....:. |..||:
  Fly   112 ---LIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQM 173

  Fly   265 KAKHRIEHISFNAIASTIMQKSMKTFCSVMQQNKATYKVPSTAVVDSIVVGAQGDIRNALINLHL 329
            ..  |:|.| ..|.|..|.:...:...::                      |:||:|
  Fly   174 MP--RLEKI-IEAEAVQITEDGKRALLTL----------------------AKGDMR-------- 205

  Fly   330 SSLKGVSSMPTKQLNVSVSAKGRKKKMQSTLKSIGRDESITLMHALGRVLNPKFNEDKTMLHSPE 394
                       |.|||          :|||:.:........:...:|..|.....:....|.|..
  Fly   206 -----------KVLNV----------LQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGS 249

  Fly   395 EITEAFNTEPRNFVNFVYANYLPHFKEIDDVVTAIN 430
            .:.::|.|    ..:..||..|    .::|::|.::
  Fly   250 SLEDSFKT----VESAKYARGL----ALEDIITELH 277

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad17	NP_650382.3	rad24	49..>466	CDD:129690	71/361 (20%)
RfC3	NP_609399.1	rfc	12..321	CDD:234763	69/356 (19%)