DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3505 and scaf

DIOPT Version :10

Sequence 1:NP_650380.2 Gene:CG3505 / 41777 FlyBaseID:FBgn0038250 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster


Alignment Length:264 Identity:65/264 - (24%)
Similarity:103/264 - (39%) Gaps:67/264 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 DTDTRIREFPWLALIEYTRGNQEKIHACGGVLISDRYVLTAAHCVAQAATSNLQITAVRL--GEW 172
            |.|....|.||.|:|   .....|...|||.:|.|::||::|.||     :.|.:|.:|:  |||
  Fly   426 DLDANFAEIPWQAMI---LRESSKTLICGGAIIGDQFVLSSASCV-----NGLPVTDIRVKAGEW 482

  Fly   173 DT-STNPDCQYHEDSKVADCAPPYQDIAIEELLPHPLYNRTDRTQINDIALVRLASPAKLNDFVQ 236
            :. |||...             |:|...::.:..||.|:.:  |..:|:|::||....:....:|
  Fly   483 ELGSTNEPL-------------PFQLTGVKTVDVHPDYDPS--TNSHDLAIIRLERRLEFASHIQ 532

  Fly   237 PICLPNKQLRADELEDLVTEVAGWQASSSQRMRKGYVTISSIEECQRKY-------ASQQLRIQA 294
            |||:.::..:  :.|...|  :||          |...:|..||....:       |..:....:
  Fly   533 PICISDEDPK--DSEQCFT--SGW----------GKQALSIHEEGALMHVTDTLPQARSECSADS 583

  Fly   295 SKLCGLTNSQECYGNAGGPLMLFKNDGYLLGGLVSFGPVPC--------PNPDWPDVYTRVASYI 351
            |.:|..|....|..:.|..|.........|.|:.: |...|        ..||           |
  Fly   584 SSVCSATKFDSCQFDVGSALACGSGSSVRLKGIFA-GENSCGEGQTVRFAKPD-----------I 636

  Fly   352 DWIH 355
            .||:
  Fly   637 KWIN 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3505NP_650380.2 CLIP 32..82 CDD:463440
Tryp_SPc 111..356 CDD:238113 64/263 (24%)
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 56/224 (25%)
Blue background indicates that the domain is not in the aligned region.

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