DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7886 and Lrrc34

DIOPT Version :9

Sequence 1:NP_650378.1 Gene:CG7886 / 41775 FlyBaseID:FBgn0038248 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_082217.1 Gene:Lrrc34 / 71827 MGIID:1919077 Length:415 Species:Mus musculus


Alignment Length:286 Identity:61/286 - (21%)
Similarity:112/286 - (39%) Gaps:53/286 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 GDKLAVSDWQLLTEALHYDLVLQQLVVRLRRTYPQTNIDPIDTEKRARLFRQRP-VIYTRFIFNS 138
            |.::...|:.||::.|.....:..:.||...      |..:.....|:|.:::| :.|...:||.
Mouse    55 GQRITGEDFWLLSKTLRNQPCISGVDVRYNL------IGDVGAFYAAKLLQKQPSITYLNLMFND 113

  Fly   139 L----VQAIANCVSSNKNLSVLKLEGLPLQDGYIETIAKALADNECLESVSFRKSNIGDKGCEVV 199
            :    .:.||..:..||.|..|::.|..:::......|..|..|..||.:.....::|.: |.:.
Mouse   114 IGPEGGELIAKALHKNKTLKYLRMTGNKIENTGGMLFAAMLQMNSSLEKLDLGDCDLGLQ-CVIA 177

  Fly   200 CNTAKYLNR-IEVFDLSE---CGLTSKGAEHVADMLK----MQKITRFTEGWE------------ 244
            .:|....|: |:..:|:.   .|...:...|:..|||    :.::.....|.:            
Mouse   178 FSTVLTQNQAIKGINLNRPILYGEQEESTVHIGHMLKENHVLVELHMCKHGMKNYGLQQLCNALY 242

  Fly   245 --KSLRYRSVDVNTIGGLRTVLLADNPEIGDVGIRWITEVLKEDAWIKKIDMEGCGLTDIGANLI 307
              .||||..|..|.|.....|.|||              |||.:..::.:|:....:...||..:
Mouse   243 LNSSLRYLDVSCNKITRDGMVFLAD--------------VLKSNTTLEVLDLSFNRIETAGAKYL 293

  Fly   308 LDCL-ELNTAITEFNVRNN----EGI 328
            .:.| ..|.::...:|.:|    ||:
Mouse   294 SETLTSHNRSLKALSVVSNKIEGEGL 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7886NP_650378.1 LRR_RI <142..320 CDD:238064 43/200 (22%)
leucine-rich repeat 153..180 CDD:275381 6/26 (23%)
leucine-rich repeat 181..208 CDD:275381 5/26 (19%)
leucine-rich repeat 209..246 CDD:275381 8/57 (14%)
leucine-rich repeat 260..285 CDD:275381 6/24 (25%)
Lrrc34NP_082217.1 LRR_RI 70..347 CDD:238064 57/271 (21%)
leucine-rich repeat 79..103 CDD:275380 5/29 (17%)
leucine-rich repeat 104..131 CDD:275380 6/26 (23%)
leucine-rich repeat 132..159 CDD:275380 6/26 (23%)
leucine-rich repeat 160..187 CDD:275380 6/27 (22%)
leucine-rich repeat 188..218 CDD:275380 7/29 (24%)
leucine-rich repeat 219..246 CDD:275380 1/26 (4%)
LRR_8 245..314 CDD:290566 21/82 (26%)
LRR 1 246..272 14/39 (36%)
leucine-rich repeat 247..274 CDD:275380 13/40 (33%)
LRR 2 274..296 3/21 (14%)
leucine-rich repeat 275..303 CDD:275380 5/27 (19%)
leucine-rich repeat 304..325 CDD:275380 4/16 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4308
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.