DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad88C and cdh23

DIOPT Version :10

Sequence 1:NP_731930.3 Gene:Cad88C / 41774 FlyBaseID:FBgn0038247 Length:1981 Species:Drosophila melanogaster
Sequence 2:NP_999974.1 Gene:cdh23 / 407978 ZFINID:ZDB-GENE-040513-7 Length:3366 Species:Danio rerio


Alignment Length:1981 Identity:569/1981 - (28%)
Similarity:907/1981 - (45%) Gaps:279/1981 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 SSISIQVIILTTLISLVASNRPPRFAIDGQSEIVLRLKESPETKVGTLIYTLKGYDPD---NDPL 98
            |::.:.:.||.      .::..|.|  |..|::.:.:.|  :|.:|..:..:...|.|   |..:
Zfish  1403 STVKVSITILD------ENDNSPEF--DITSDLSVNIPE--DTAIGKRVAVVLARDKDAGRNGLV 1457

  Fly    99 TFGKRNSHDSEIIRIENTGGNEAKIFLAKELDRELQDEYAIVLTLTDSHYSDHNYVTQSFLLLVE 163
            .|.....:..::.:|........:::|...||||..|.|.:.:...|:. |...|...|..:.:.
Zfish  1458 NFTLIAGNMQDVFKINTVNNTYGEVYLNAPLDRESVDRYLLKVRAMDNG-SPPRYTDVSLTVNIV 1521

  Fly   164 DINDNVPTF-LPYQNAIEIPEGSAPGV-VSTLEATDADEGAYGQVVYYLQELDGDNDV-FSIATH 225
            |:|||.|.. .|....:.:.|....|. |..:.|||.|.||...:.||:..  |:.|: |.:...
Zfish  1522 DVNDNPPVLQSPRGYNVSVSENVGGGTSVLRVVATDRDIGANAMLSYYITA--GNQDLTFRMDRM 1584

  Fly   226 QGKGILRLQKELDYERKSLYQLRVLAIDRANQGPINTGTAAILVKVKDLEDQPPEFVEVQAVARI 290
            .|:.:.| ....|.|::..|.|.|...|...  |..:.:..:.|::.|..|..|||.|.:.|..:
Zfish  1585 TGEIVTR-PSPPDREKQQQYTLTVTVEDDGT--PTLSTSTTVWVRIIDENDNAPEFPEEEYVTEL 1646

  Fly   291 AEDA-PVGTKVLRVRAIDGDRGINNPIAYSLEANDL---FDINPHTGIVHTLTKLDREEQSDQVN 351
            .|.. .||..:..|.|||.|.|:|..|.|::...:|   |.||..||.:..::.||.|..    |
Zfish  1647 REGPNTVGAIIATVTAIDPDEGLNGTIRYAISKGNLAQTFQINSVTGQIVVVSALDYEIS----N 1707

  Fly   352 GAHILRISATELSKSNTQMAPTTVRTEVTVIVSDVNDEIPTF---------------GETVYRCE 401
            |.::|.::||:  :....:...|..|.|.|.|.||||..|.|               |..|:..:
Zfish  1708 GHYVLTVTATD--QCPIPLLRLTSSTTVLVNVIDVNDNPPIFPRPFEGPFEITEGQPGPRVWTVK 1770

  Fly   402 VNENAQTNTPLNFIDEEVQNVVFDHDEGNNGTFRLFLDPPNDLFEIVPELAVNEANFMLRVKNSK 466
            ..                     |.|.|:||.....:...    ::..|..::.....|||:...
Zfish  1771 AT---------------------DADSGSNGKVEYSITAG----DLKNEFVISSVEGELRVRKDI 1810

  Fly   467 SLDFEQFTEVNFTIFAREVDEPSRWSSAHVQIFIRDQNDNFPEFSQTIYNASVLENSEQDTIITH 531
            .||.|.....|.||.|:::..||..::..|.|.:.|.|||.|.......|.||.|.:...|.|..
Zfish  1811 ELDRETIAYYNITITAKDLGTPSLNATVVVGILVLDINDNDPILLNLPANTSVSEGAAVQTFIIQ 1875

  Fly   532 VQAVDVDSGDYGTMGIRYTNLRGGIAHLLNLNPITGVITIKQAGGTAFDREIISRHYLTVEAIDN 596
            |:|.|.|||....  :.|:...|.......:|..:||:.:.:    ..|||.::.:.||:...||
Zfish  1876 VRAQDSDSGRNAL--LTYSITAGNSDGAFYINETSGVVQVNR----PLDRERVAEYSLTITVKDN 1934

  Fly   597 AGQ---GNRNTAQIIVDILDVNDNAPTFPQRQYETKLLENQAEFETPLQLE----ARDADLNGTE 654
            ...   ..|::..:.|.:||||||.|.|.|..|..::.||.....|.|.|.    |.|.|:.  .
Zfish  1935 PDNPRIARRDSELLTVTLLDVNDNRPIFSQSSYRGEISENSPTGTTVLILNGPVLAEDKDIG--V 1997

  Fly   655 NSQVTYEIVEGLYRSNFTIDPQSGLLRPVHSFDFEELVDGSSRRSDPYTGGSFSIREIDLLVRAR 719
            |:.|:|.:: |.....|:||.::|::              |.|........:||:..::|.:.:.
Zfish  1998 NAVVSYGLL-GTRVDIFSIDSRTGVV--------------SVRGGAVLDREAFSVPRVELFLVSV 2047

  Fly   720 DSGIPMLSTVVPVLIYVQDVNDNAPIFQQSFYAKTVPEDLPGGSSVLQVTAIDRDGSAPNNVVVY 784
            |.|  .|::.||:.|.:.|||||.|:|..|.:...:||:.|.|..|.|::|.|.|..: |..:.|
Zfish  2048 DVG--GLNSSVPLTITILDVNDNPPVFNPSSFTVRLPENSPTGVVVTQLSATDADAGS-NGWLQY 2109

  Fly   785 RIQTGAGDKFIINSETGVISVAHGANLDPDLTESKRSLYTLSVIALDGGLGNSQLMTTCTVNISI 849
            |:.:||.|:||:::.:|.:.|.: |.||    ..:||.|.|.|||.|  .|...|..|.|:.:.:
Zfish  2110 RLDSGAQDRFIVDALSGAVLVGN-ATLD----REERSSYRLVVIATD--RGTPSLSGTATLTVVL 2167

  Fly   850 QDVN-NKPPVLKEMPALQILENTPVGTLVYRIQATDLDHKAILRYKLNPEHC--EGRTEEGALVK 911
            .||| ::|..::.:..:.:.|:||.|.:|..:.|.|.|.|..|.|.:.....  :|......|.:
Zfish  2168 DDVNDSRPRFIQPVQTISVNESTPPGVVVATLAAEDPDLKPRLEYYIISVEAKDDGNNAVDGLQQ 2232

  Fly   912 SSEYDFLGAFEVDSIEGTLKVVKLLDRERVEHIKLAITVEDLAA---AKGRQIAEGFLSIQVLDE 973
            |        |.:|...|.:.|...|:||.|...::.::|.|.|:   .....:....|:|.|||.
Zfish  2233 S--------FGIDFHTGAVFVRNPLNRELVATFEIIVSVHDNASDVIEMSVSVPNAKLTINVLDV 2289

  Fly   974 NDNNPKFRLPF----YRQSITENSINGAMIVNVLASDVDK--NRTITYALEGNPTYRSLMHLDPQ 1032
            |||.|:|| ||    :.:||.|.::.|..:::|.|.|.||  |..|.|.|...|....:...||.
Zfish  2290 NDNAPRFR-PFGVANFSESILEGAVPGTTLLSVTAVDPDKGPNGQIIYQLLNLPRGNYIRLEDPS 2353

  Fly  1033 TGEIVVASKIDHEQHQWLNFSVRATDSGIPARSSLVDVYITVLDENDNNPYFVGGSKNYTISENA 1097
            ||:||....:|.||.|||||:|||.|.|.|.|.:.:.||:.::|.|||||.|.......:|.|:.
Zfish  2354 TGKIVANRTVDFEQVQWLNFTVRAQDHGSPPRFTELPVYLRIIDVNDNNPVFQQPLYQKSIFEDV 2418

  Fly  1098 APGTRVATLQAGDADSGDFGKITFLMDRISSQGKFTIDADTGVLTVADRLDRESKDSYNLVIEAW 1162
            |.||.:.:::|.|||||.|..|.:.:  :..:|||.|...||.:.:...||||:||.|.|...|.
Zfish  2419 ALGTIIVSVRATDADSGLFSVIEYGL--VDGEGKFGITPTTGDIYILSALDRETKDRYTLTAYAR 2481

  Fly  1163 DNYQFGFLAGESRNAFKQVFISILDENDNPPEVDLPMSCVLITEYHELHERVASIVGKDADDPTT 1227
            ||.  |......|....||.:::||.||..|.....:....:.|...:...|.::...|.|:  .
Zfish  2482 DNP--GGSPNNRRENSVQVQLTVLDVNDFRPRFSERVFTTSVFENEPVGTSVITMKATDLDE--G 2542

  Fly  1228 PNGRLDFAITRGNKDGMFELRQIDAWNAQIFASKSLRNRYGNYSLTITTRDMGLPANIVHNTLDI 1292
            .|..|.:::.....|..    .:|. :..:..|..|...:..::||:...|.|.|......:|.|
Zfish  2543 ENALLTYSLQGPGADAF----SLDP-DTGLIRSLRLLQSFERFNLTVVATDQGRPPLWGTASLQI 2602

  Fly  1293 CVSDFNDHAPVFVRPLHNTTVRIPENATVGTLILQAYASDGDMGQNALVRYRLKPDPLGS--YKM 1355
            .|.|.||:.|:||||.:.|.:.|.|....|.::.:.:|:|.|.|.|..|||.......|:  ::.
Zfish  2603 TVIDVNDNRPIFVRPANGTIMHILEEQPPGLVVYEVFATDEDEGVNGEVRYSFLQTGAGNRDWEN 2667

  Fly  1356 FEVDGSTGELFLKEQLNREKQKIHEIRIEAYDQGLPTSLSSDLDLTIYVRNVNDYEPQFM----- 1415
            |.:|..||.:....:|:||||.::.:.:.|||.|.|....:...|.:.:.:::|.||.|:     
Zfish  2668 FHIDAVTGVITTAVKLDREKQALYSLVVVAYDLGQPVPYETMQPLQVALSDIDDNEPVFLKPPRG 2732

  Fly  1416 -VNEISVNFTEHSDPGSERIKLPDTIDKDQLELDDPNDTPSQVCYFIVNGNEAGYFRLDPETHIL 1479
             :...|::..|||.||:....:...:|.|:       .:.:.|.|||..|:..|.|.|. .:.:|
Zfish  2733 SLPYQSLSVPEHSSPGTVVGNVTGAVDADE-------GSNAIVYYFIAGGDTGGNFALS-VSGVL 2789

  Fly  1480 TVDRELDREVIANFTLYVRATENCRNDSISGGEKRRRMGIEINNRLGGIVHNQQFGYDRFKHSRQ 1544
            .|.::||||.|..:::.|:|:.| ||.:...|::.:|                            
Zfish  2790 RVKKDLDREEIPVYSIIVKASSN-RNWTPPKGQRSQR---------------------------- 2825

  Fly  1545 LRSTESNEYGPEDAELLSYEAYDSSQEDPTGGLATTHPELDSTVIKVKVRVLDINDNPPRFRSKI 1609
                         |::|.                   |..|.|:.:|::.:.||||..|||....
Zfish  2826 -------------AQVLD-------------------PSRDPTLQEVRIFLEDINDQSPRFTKLE 2858

  Fly  1610 FTGGITTNADFGLKFMRVEATDADEGDNGRIGYYQVG----EIRQTLSEGLENVRKAPFLLDQET 1670
            :|.|:..:|..|...:||:|.|.|.|:|..:.|:.:.    ::....||.:.||    |::. ||
Zfish  2859 YTTGVAADAKVGSDLIRVQAIDNDIGNNSLVLYHILSIRYIKLHSNDSEEMGNV----FIIG-ET 2918

  Fly  1671 GEVQLNFD------PQKGMKGYFDFVVLANDTSGMKDVAHVFIYLLREDQKVRFVFRLQPDELRS 1729
            ..:...||      |     |||...|||.|.:|..|||.|.||:||:||:|:.|....|:.:|.
Zfish  2919 DGIICTFDLFMAYAP-----GYFIVEVLARDLAGHSDVALVSIYILRDDQRVKIVINEIPERVRL 2978

  Fly  1730 RVDSFRDTLSNITESIVNIDEIKVHENKDGSVDKTKTDLYMHLVEREDNSIYEVSEVLKLIDSHI 1794
            ..:.|.:.|||||.:|||.|:::.|.:|.|.|:..:||:.:|:|.::.|.|.:|.:|:::||.:.
Zfish  2979 FQEEFINLLSNITGAIVNTDDVQFHVDKKGRVNFAQTDVLIHVVNKQTNRILDVEKVIQMIDENK 3043

  Fly  1795 ESLNGLFKELNVLDTQAAEAQLLTAGPSRGP-------LFVWLIFTNLFLATLLVVTIALCASQR 1852
            |.|..||:..|:||.|.|    :||   |.|       :.:.::...||||.:|.  |.:....|
Zfish  3044 EQLRNLFRNYNILDVQPA----VTA---RAPDDLTTLQMAIIILAVLLFLAAMLF--ILMNWYYR 3099

  Fly  1853 NGYRRQLRAAKVNIFRGHSSMSLQDAQEPATRVPNTNKHSVQGSNPIWLKGYDNEWFKSEESGSI 1917
            ..::|:|:|...........|.:.|       :|||||::.:|:||:||    :.:.::.|..:.
Zfish  3100 TVHKRKLKAVVAGSTGNQGLMDILD-------MPNTNKYTFEGANPVWL----DPFCRNLELAAQ 3153

  Fly  1918 GGHDSLDDNFLAVATQDMHETLKGTAKLFNN 1948
            ..|:           .|:.|.|...|.|:|:
Zfish  3154 AEHE-----------DDLPEDLSDIADLWNS 3173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad88CNP_731930.3 Cadherin_repeat 76..168 CDD:206637 20/94 (21%)
Cadherin_repeat 179..276 CDD:206637 25/98 (26%)
Cadherin_repeat 287..388 CDD:206637 34/104 (33%)
Cadherin_repeat 397..506 CDD:206637 23/108 (21%)
Cadherin_repeat 514..617 CDD:206637 30/105 (29%)
Cadherin_repeat 625..742 CDD:206637 31/120 (26%)
Cadherin_repeat 751..853 CDD:206637 35/101 (35%)
Cadherin_repeat 865..976 CDD:206637 31/115 (27%)
Cadherin_repeat 985..1080 CDD:206637 39/96 (41%)
Cadherin_repeat 1090..1191 CDD:206637 37/100 (37%)
CA 1221..1302 CDD:214520 19/80 (24%)
Cadherin_repeat 1312..1409 CDD:206637 27/98 (28%)
Cadherin_repeat 1418..>1502 CDD:206637 25/83 (30%)
Cadherin_repeat 1617..1710 CDD:206637 34/102 (33%)
cdh23NP_999974.1 Cadherin_repeat 48..134 CDD:206637
Cadherin_repeat 142..237 CDD:206637
Cadherin_repeat 246..350 CDD:206637
Cadherin_repeat 358..460 CDD:206637
Cadherin_repeat 469..561 CDD:206637
Cadherin_repeat 570..671 CDD:206637
Cadherin_repeat 679..778 CDD:206637
Cadherin_repeat 786..890 CDD:206637
Cadherin_repeat 898..994 CDD:206637
Cadherin_repeat 1003..1102 CDD:206637
Cadherin_repeat 1110..1206 CDD:206637
Cadherin_repeat 1221..1311 CDD:206637
Cadherin_repeat 1321..1417 CDD:206637 3/19 (16%)
Cadherin_repeat 1428..1526 CDD:206637 21/100 (21%)
Cadherin_repeat 1536..1633 CDD:206637 25/101 (25%)
Cadherin_repeat 1641..1743 CDD:206637 35/107 (33%)
Cadherin_repeat 1755..1850 CDD:206637 24/119 (20%)
Cadherin_repeat 1858..1958 CDD:206637 30/105 (29%)
Cadherin_repeat 1966..2068 CDD:206637 31/120 (26%)
Cadherin_repeat 2076..2172 CDD:206637 36/103 (35%)
Cadherin_repeat 2181..2292 CDD:206637 31/118 (26%)
Cadherin_repeat 2304..2401 CDD:206637 39/96 (41%)
Cadherin_repeat 2410..2507 CDD:206637 36/100 (36%)
Cadherin_repeat 2516..2610 CDD:206637 20/100 (20%)
Cadherin_repeat 2624..2722 CDD:206637 27/97 (28%)
Cadherin_repeat 2738..2849 CDD:206637 38/179 (21%)
Cadherin_repeat 2858..2959 CDD:206637 36/110 (33%)
Blue background indicates that the domain is not in the aligned region.

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