DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad88C and CadN2

DIOPT Version :10

Sequence 1:NP_731930.3 Gene:Cad88C / 41774 FlyBaseID:FBgn0038247 Length:1981 Species:Drosophila melanogaster
Sequence 2:NP_609855.3 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster


Alignment Length:1232 Identity:275/1232 - (22%)
Similarity:454/1232 - (36%) Gaps:416/1232 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   496 VQIFIRDQNDNFPEFSQTIYNASVLENSE-QDTIITHVQAVDVDSGDYG-TMGIRYTNLRGGIAH 558
            |:|.|.|:||:.|.|.:.:|...:.||:: |.|::|      |::.|:. :..|||....|.|.:
  Fly    22 VRIGIADKNDSPPYFDRFLYETEIDENADLQSTVLT------VNAKDHNESTNIRYQITGGNIGN 80

  Fly   559 LLNLNPITGVITIKQAGGTAFDREIISRHYLTVEAIDNAGQGNRNTAQIIVDILDVNDNAPTFPQ 623
            ...:...||||.:    .:..|.|...|:.|.:||..|.   ..|...:::::.|||||.|.|.:
  Fly    81 AFAVQNTTGVIYV----ASPLDYETRPRYELRLEATRNR---KNNYTTVVINVRDVNDNPPVFDR 138

  Fly   624 RQYETKLLENQAEFETP---LQLEARDADLNGTENSQVTYEIVEGLYRSNFTIDPQSGLLRPVHS 685
            :.|.|::.| :.:...|   ||:.|.|.|::...|  :.|      :.:...|||.:    |.:|
  Fly   139 QTYRTQITE-EDDRNLPKRILQVTATDGDVDRPIN--IVY------FLTGQGIDPDN----PANS 190

  Fly   686 -FDFEELVDGSSRRSDPYTGGSFSIREID-----------LLVRARDSGIPMLSTVVPVLIYVQD 738
             ||....           ||..|.::.:|           ..|.|:|.|...|.....:.:.::|
  Fly   191 KFDINRT-----------TGDIFVLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVGYADIQVNLKD 244

  Fly   739 VNDNAPIFQQSFYAKTVPEDLPGGSSVLQVTAIDRD--GSAPNNVVVYRI-------QTGAGDKF 794
            :|||||.|.|..|...|.|:...||||:.::|:|.|  ..:.|..::|.|       :||| ..|
  Fly   245 INDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEEETGA-PIF 308

  Fly   795 IINSETGVISVAHGANLDPDLTESKRSLYTLSVIALDGGLGNSQLMTTCTVNISIQDVNNKPP-V 858
            .|..|||:|..| ...||.:.|..    |::.|:|:|||    .|..|.|.:|.::|:|:.|| .
  Fly   309 EIEPETGLIKTA-VCCLDRERTPD----YSIQVVAMDGG----GLKGTGTASIRVKDLNDMPPQF 364

  Fly   859 LKEMPALQI-------LENTPVGTLVYRIQATDLDHKAILRYKLNPEHCEGRTEEGALVKSSEYD 916
            .|:....::       :..||:.|    :...|.|.....:||:.|....| .::.|:|::.:  
  Fly   365 TKDEWVTEVDETNGTYIPETPILT----VTVQDEDETNTFQYKVVPNSGFG-ADKFAMVRNGD-- 422

  Fly   917 FLGAFEVDSIEGTLKVVKLLDRERVEHIKLAITVEDLAAAKGRQIAEGF-LSIQVLDENDNNPKF 980
              |.       |:||:::.||.|           :.|.::       || ..|||.|:.|:.|  
  Fly   423 --GT-------GSLKIIQPLDYE-----------DPLQSS-------GFRFRIQVNDKGDDGP-- 458

  Fly   981 RLPFYRQSITENSINGAMIVNVLASDVDKNRTITYALEGNPTYRSLMHLDPQTGEIVVASKIDHE 1045
                                                 .|:..|                    |.
  Fly   459 -------------------------------------GGSDKY--------------------HV 466

  Fly  1046 QHQWLNFSVRATDSGIPARSSLVDVYITVLDENDNNPYFVGGSKNYTISENAAPGTRVATLQAGD 1110
            .:.|                    |.:.:.|.|||.|.|.......:|.|:...||.:...:|.|
  Fly   467 AYSW--------------------VVVKLRDINDNVPKFDREHIEVSIYEDTKVGTILEQFKATD 511

  Fly  1111 ADSGDFGKITFLMDRISSQGKFTIDADTGVLTVADRLDRESKDSYNLVIEAWDNYQFGFLAGESR 1175
            ||.|...|:.:.:.|.:::.:....:|.|.:::...||||::|.:::.|.|.|:           
  Fly   512 ADQGGHSKVAYKIVRSTNRKRQFAISDRGAVSIQRPLDRETQDRHHIQILAIDD----------- 565

  Fly  1176 NAFKQVFISILDENDNPPEVDLPMSCVLITEYHELHERVASIVGKDADDPTTPNGRLDFAITRGN 1240
                                                                             
  Fly   566 ----------------------------------------------------------------- 565

  Fly  1241 KDGMFELRQIDAWNAQIFASKSLRNRYGNYSLTITTRDMGLPANIVHNTLDICVSDFNDHAPVFV 1305
                                                   |.||.....||.:.|.|.||:||.|.
  Fly   566 ---------------------------------------GSPARTATATLTVIVKDVNDNAPTFA 591

  Fly  1306 RPLHNTTVRIPENATVGTLILQAYASDGD---MGQNALVRYRLKPDPLGSYKM---FEV------ 1358
            :....|   :|||.: |..||:..|.|.|   .|......:||  |||.|.::   |:|      
  Fly   592 QDYKPT---LPENVS-GKKILEVAAKDPDDRLRGNGGPFTFRL--DPLASDEIKAGFKVEYDRRG 650

  Fly  1359 DGSTGELFLK--EQLNREKQKIHEIRIEAYDQGLPTSLSSDLDLTIYVRNVNDYEPQFMVNEISV 1421
            |...|...:.  ...:||.||.:.|.||..|.|.| :::....||:.:.:|||.:.|        
  Fly   651 DNENGVAIISSLRPFDREAQKSYAIPIEIKDNGAP-AMTGTSTLTVTIGDVNDNKMQ-------- 706

  Fly  1422 NFTEHSDPGSERIKLPDTIDKDQ------LELDDPN--DTPSQVCYFIVNGNEAGYFRLDPETHI 1478
                   |||:.:.:.:...:.|      :.::||:  |.|.:..|:.|..::.  |:||.:|.|
  Fly   707 -------PGSKSVLVYNYQGQSQDTPIGRVYVNDPDDWDVPDKKYYWEVQEHQR--FKLDTDTGI 762

  Fly  1479 LTV----------------DRELDREVI-ANFTLYVR------------------------ATEN 1502
            ||:                |||..:|.| ||.::.||                        .|.|
  Fly   763 LTMRAGTRRGRYQLRFKVYDREHGQEDIPANLSVTVRDITAEAVQQAGSMRLSHITDEDFVRTWN 827

  Fly  1503 CRNDSISGGEKRRRMGIEINNRLGGIVHNQQFGYDRFKHSRQLRSTESNEYGPEDAELLSYEAYD 1567
            ...:.:...:..|     ..|:|..:::..:...|.|  |.||:  |.:.|...|...    |..
  Fly   828 PVKNQVEPSKLER-----FRNKLAELLYTDRDNVDVF--SVQLK--EGSPYPLTDVHF----AAR 879

  Fly  1568 SSQEDP------TGGLATTHPELDSTVIKVKVRVLDINDNPPRFRSKIFTGGITTNADFGLK 1623
            |:.:.|      ..|:...|.|.....:.:.:.:::||:.....:.|..:...|:..:.|.|
  Fly   880 SATQQPYFKAVRLNGVVQMHREEIEKDVGLNITMVNINECLHEGKGKCGSNSCTSKVELGKK 941

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad88CNP_731930.3 Cadherin_repeat 76..168 CDD:206637
Cadherin_repeat 179..276 CDD:206637
Cadherin_repeat 287..388 CDD:206637
Cadherin_repeat 397..506 CDD:206637 5/9 (56%)
Cadherin_repeat 514..617 CDD:206637 28/104 (27%)
Cadherin_repeat 625..742 CDD:206637 29/131 (22%)
Cadherin_repeat 751..853 CDD:206637 37/110 (34%)
Cadherin_repeat 865..976 CDD:206637 25/118 (21%)
Cadherin_repeat 985..1080 CDD:206637 7/94 (7%)
Cadherin_repeat 1090..1191 CDD:206637 21/100 (21%)
CA 1221..1302 CDD:214520 9/80 (11%)
Cadherin_repeat 1312..1409 CDD:206637 33/110 (30%)
Cadherin_repeat 1418..>1502 CDD:206637 27/132 (20%)
Cadherin_repeat 1617..1710 CDD:206637 2/7 (29%)
CadN2NP_609855.3 Cadherin_repeat 41..132 CDD:206637 28/103 (27%)
Cadherin_repeat 140..248 CDD:206637 29/131 (22%)
Cadherin_repeat 256..359 CDD:206637 37/112 (33%)
CA 388..483 CDD:214520 34/207 (16%)
Cadherin_repeat 489..586 CDD:206637 29/211 (14%)
Cadherin_repeat 594..703 CDD:206637 35/115 (30%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 1233..1259 CDD:400365
LamG 1265..1426 CDD:238058
EGF_CA 1497..1535 CDD:238011
CADH_Y-type_LIR 1662..1719 CDD:460041
Blue background indicates that the domain is not in the aligned region.

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