Sequence 1: | NP_731930.3 | Gene: | Cad88C / 41774 | FlyBaseID: | FBgn0038247 | Length: | 1981 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038953281.1 | Gene: | Pcdh1 / 307481 | RGDID: | 1308490 | Length: | 1231 | Species: | Rattus norvegicus |
Alignment Length: | 1487 | Identity: | 329/1487 - (22%) |
---|---|---|---|
Similarity: | 520/1487 - (34%) | Gaps: | 499/1487 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 259 PINTGTAAILVKVKDLEDQPPEFVEVQAVARIAED-----------APVGTKVLRVRAIDGDRGI 312
Fly 313 NNPIAYSLEANDLFDINPHTGIVHTLTKLDRE---EQSDQVNGAHIL---RISATELSKSNTQMA 371
Fly 372 PTTVRTEVTVIVSDVNDEIPTFGETVYRCEVNENAQTNT----PLNFIDEEVQNVVFDHDEGNNG 432
Fly 433 --TFRLFLDP-PNDLF---------EIVPELAVNEANFMLRVKNSKSLDFEQFTEVNFTIFAREV 485
Fly 486 DEPSRWSSAHVQIFIRDQNDNFPEFSQTIYNASVLENSEQDTIITHVQAVDVDSGDYGTMGIRYT 550
Fly 551 NLRGGIAHLLNLNPITGVITIKQAGGTAFDREIISRHYLTVEAIDNAGQGNRNTAQIIVDILDVN 615
Fly 616 DNAPTFPQR--------QYETKLLENQAEFETPLQLEARDADLNGTENSQVTYEIVEGLYRSNFT 672
Fly 673 IDPQSG-------LLRPVHSFDFEELVDGSSRRSDPYTGGSFSIREIDLLVRARDSGIPMLSTVV 730
Fly 731 PVLIYVQDVNDNAPIFQQSFYAKTVPEDLPGGSSVLQVTAIDRDGSAPNNVVVYRI--QTGAGDK 793
Fly 794 FIINSETGVISVAHGANLDPDLTESKRSLYTLSVIALDGGLGNSQLMTTCTVNISIQDVNNKPPV 858
Fly 859 LKEMPALQILENTPVGTLVYRIQATDLDHKAILRYKLNPEHCEGRTEEGALVKSSEYDFLGAFEV 923
Fly 924 DSIEGTLKVVKLLDRERVEHIKLAITVEDLAAAKGRQIAEGFLSIQVLDENDNNPKFRLPFYRQS 988
Fly 989 ITEN--SINGAMIVNVLASDVDKNRTITYALEGNPTYRSLMHLDPQTGEIVVASKIDHEQHQWLN 1051
Fly 1052 FSVRATDSGIPARSSLVDVYITVLDENDNNPYFVGGSKNYTISENAAPGTR----VATLQAGDAD 1112
Fly 1113 SGDFGKITFLMDRISSQGKFTIDADTGVLTVADRLDRESKDSYNLVIEAWDN------------- 1164
Fly 1165 YQFGFLAGESRNAFKQVFISILDENDNPPEVDLPMSCVLITEYHELHER-------VASIVG--- 1219
Fly 1220 ---------------------------KDADDPTTPNGRLDFAITRGNKDGMFELRQIDAWNAQI 1257
Fly 1258 FASKSLRNRYGNYSLTITTR-DMGLPANIVHNTLDICVSDFNDHAPVFVRPLHNTTVRIPENATV 1321
Fly 1322 GTLILQAYASDGDMGQNALVRYRLKPDPLGSYKMFEVDGSTGELFLKEQLNREKQKIHEIRIEAY 1386
Fly 1387 DQGLP-----------TSLSSDLDLTIYVRNVNDYE-----PQFMVNEI---SVNF--------- 1423
Fly 1424 ---TEHS--DPGSERIKLPDTIDKDQLELDDPNDTPSQVCYFIVNGNEAGYFRLDPETHILTVDR 1483
Fly 1484 -ELDREVIANFTLYVRATENCRNDSISGGEKRRRMGIEINNRLGGIVHNQQFGYD-------RFK 1540
Fly 1541 HSRQLRSTESNEYGPEDAELLSYEAY-DSSQEDPTGGLATTHPELDSTVIKVKVRVL 1596 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Cad88C | NP_731930.3 | Cadherin_repeat | 76..168 | CDD:206637 | |
Cadherin_repeat | 179..276 | CDD:206637 | 4/16 (25%) | ||
Cadherin_repeat | 287..388 | CDD:206637 | 26/117 (22%) | ||
Cadherin_repeat | 397..506 | CDD:206637 | 30/124 (24%) | ||
Cadherin_repeat | 514..617 | CDD:206637 | 29/102 (28%) | ||
Cadherin_repeat | 625..742 | CDD:206637 | 32/123 (26%) | ||
Cadherin_repeat | 751..853 | CDD:206637 | 27/103 (26%) | ||
Cadherin_repeat | 865..976 | CDD:206637 | 9/110 (8%) | ||
Cadherin_repeat | 985..1080 | CDD:206637 | 30/96 (31%) | ||
Cadherin_repeat | 1090..1191 | CDD:206637 | 25/117 (21%) | ||
CA | 1221..1302 | CDD:214520 | 14/81 (17%) | ||
Cadherin_repeat | 1312..1409 | CDD:206637 | 18/107 (17%) | ||
Cadherin_repeat | 1418..>1502 | CDD:206637 | 19/101 (19%) | ||
Cadherin_repeat | 1617..1710 | CDD:206637 | |||
Pcdh1 | XP_038953281.1 | Cadherin_2 | 52..131 | CDD:400525 | 26/108 (24%) |
Cadherin_repeat | 165..269 | CDD:206637 | 30/124 (24%) | ||
Cadherin_repeat | 277..376 | CDD:206637 | 29/102 (28%) | ||
Cadherin_repeat | 395..495 | CDD:206637 | 32/120 (27%) | ||
Cadherin_repeat | 505..601 | CDD:206637 | 36/225 (16%) | ||
Cadherin_repeat | 610..704 | CDD:206637 | 30/96 (31%) | ||
Cadherin_repeat | 723..805 | CDD:206637 | 18/81 (22%) | ||
Protocadherin | 808..1022 | CDD:400603 | 50/298 (17%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.000 |