DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad88C and Pcdh1

DIOPT Version :9

Sequence 1:NP_731930.3 Gene:Cad88C / 41774 FlyBaseID:FBgn0038247 Length:1981 Species:Drosophila melanogaster
Sequence 2:XP_038953281.1 Gene:Pcdh1 / 307481 RGDID:1308490 Length:1231 Species:Rattus norvegicus


Alignment Length:1487 Identity:329/1487 - (22%)
Similarity:520/1487 - (34%) Gaps:499/1487 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   259 PINTGTAAILVKVKDLEDQPPEFVEVQAVARIAED-----------APVGTKVLRVRAIDGDRGI 312
            |..:.|..::.||.  |:|||..:    :..:|.|           ..||...|||   ||..| 
  Rat    45 PSASHTTQVVYKVP--EEQPPNTL----IGSLAADYGLPDVGHLYKLEVGAPYLRV---DGKTG- 99

  Fly   313 NNPIAYSLEANDLFDINPHTGIVHTLTKLDRE---EQSDQVNGAHIL---RISATELSKSNTQMA 371
                       |:|.         |.|.:|||   |..:|::|:..:   .:|.|:|.::.   :
  Rat   100 -----------DIFT---------TETSIDREGLRECQNQISGSPCILEFEVSITDLVQNG---S 141

  Fly   372 PTTVRTEVTVIVSDVNDEIPTFGETVYRCEVNENAQTNT----PLNFIDEEVQNVVFDHDEGNNG 432
            |..:..::.  |.|:||..|.|...|....:.||....:    ||          ..|.|.|.||
  Rat   142 PRLLEGQIE--VQDINDNTPNFASPVITLAIPENTNIGSLFPIPL----------ATDRDAGPNG 194

  Fly   433 --TFRLFLDP-PNDLF---------EIVPELAVNEANFMLRVKNSKSLDFEQFTEVNFTIFAREV 485
              ::.|...| ..:||         |..|:|.|           ..:||.|::...:.||..::.
  Rat   195 VASYELQAGPEAQELFGLQVAEDQEEKQPQLIV-----------MGNLDRERWDSYDLTIKVQDG 248

  Fly   486 DEPSRWSSAHVQIFIRDQNDNFPEFSQTIYNASVLENSEQDTIITHVQAVDVDSGDYGTMGIRYT 550
            ..|.|.|||.:::.:.|.|||.|:|.:..|.|.:.|||.....:..|:|.|.|.|....:...:.
  Rat   249 GSPPRASSALLRVTVLDTNDNAPKFERPTYEAELSENSPIGHSVIQVKANDSDQGANAEIDYTFH 313

  Fly   551 NLRGGIAHLLNLNPITGVITIKQAGGTAFDREIISRHYLTVEAIDNAGQGNRNTAQIIVDILDVN 615
            .....:..||.|:..||:||::    ...|||.:|....:|.|.|.........||::|.:.|:|
  Rat   314 QAPEVVRRLLRLDRNTGLITVQ----GPVDREDLSTLRFSVLAKDRGANPKSARAQVVVTVKDMN 374

  Fly   616 DNAPTFPQR--------QYETKLLENQAEFETPLQLEARDADLNGTENSQVTYEIVEGLYRSNFT 672
            |||||...|        .....:.|:.|| ||.:.| .:.:|.:..||:.||. :|.|.......
  Rat   375 DNAPTIEIRGIGLVTHQDGMANISEDVAE-ETAVAL-VQVSDRDEGENAAVTC-VVAGDVPFQLR 436

  Fly   673 IDPQSG-------LLRPVHSFDFEELVDGSSRRSDPYTGGSFSIREIDLLVRARDSGIPMLSTVV 730
            ...::|       .|:.....|:|::.|        ||        |:::  |.|||.|.||:..
  Rat   437 QASETGSDSKKKYFLQTTTPLDYEKVKD--------YT--------IEIV--AVDSGNPPLSSTN 483

  Fly   731 PVLIYVQDVNDNAPIFQQSFYAKTVPEDLPGGSSVLQVTAIDRDGSAPNNVVVYRI--QTGAGDK 793
            .:.:.|.|||||||:|.||......||:...|..|.:|||.|.| |..|..:||.:  :..|...
  Rat   484 SLRVQVVDVNDNAPVFTQSITEVAFPENNKPGEVVAEVTASDAD-SGSNAELVYSLEPEPAAQGL 547

  Fly   794 FIINSETGVISVAHGANLDPDLTESKRSLYTLSVIALDGGLGNSQLMTTCTVNISIQDVNNKPPV 858
            |.|:.|.|.:.|      ...|...:|..|.|.|:|.|.|                         
  Rat   548 FTISPENGEVRV------KTSLDREQRDSYELKVVAADRG------------------------- 581

  Fly   859 LKEMPALQILENTPVGTLVYRIQATDLDHKAILRYKLNPEHCEGRTEEGALVKSSEYDFLGAFEV 923
                                                 :|                          
  Rat   582 -------------------------------------SP-------------------------- 583

  Fly   924 DSIEGTLKVVKLLDRERVEHIKLAITVEDLAAAKGRQIAEGFLSIQVLDENDNNPKFRLPFYRQS 988
             |::||..|:                                  :.|||.|||:|||.|..|..|
  Rat   584 -SLQGTATVL----------------------------------VNVLDCNDNDPKFMLSGYNFS 613

  Fly   989 ITEN--SINGAMIVNVLASDVDKNRTITYALEGNPTYRSLMHLDPQTGEIVVASKIDHEQHQWLN 1051
            :.||  :::...:|.|:..|..:|..:..::|.:   .....:...||.|:.:...|.||.....
  Rat   614 VMENMPALSPVGMVTVIDGDKGENARVQLSVEQD---NGDFVIQNGTGTILSSLSFDREQQSTYT 675

  Fly  1052 FSVRATDSGIPARSSLVDVYITVLDENDNNPYFVGGSKNYTISENAAPGTR----VATLQAGDAD 1112
            |.::|.|.|:|.||:.|.|.|.|||||||.|:....|.  |......|.||    |:.:.|.|.|
  Rat   676 FQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSN--TSHRLLTPQTRLGETVSQVTAEDID 738

  Fly  1113 SGDFGKITFLMDRISSQGKFTIDADTGVLTVADRLDRESKDSYNLVIEAWDN------------- 1164
            ||...::|:.:...:..|.|.|.:.:|.:|:...::|.....:.||::..|.             
  Rat   739 SGINAELTYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRGKPPRYGTALVHL 803

  Fly  1165 YQFGFLAGESRNAFKQVFISILDENDNPPEVDLPMSCVLITEYHELHER-------VASIVG--- 1219
            |....||  :|...:.:.:..|   |.|.::|:...    .||....:|       ||.:|.   
  Rat   804 YVNETLA--NRTLLETLLVHSL---DTPLDIDIAGD----PEYERSKQRGNILFGVVAGVVAVAL 859

  Fly  1220 ---------------------------KDADDPTTPNGRLDFAITRGNKDGMFELRQIDAWNAQI 1257
                                       ||...| .|:|:    ..:|:|                
  Rat   860 LIALAVLVRYCRQREAKSGYQAGKKETKDLYAP-KPSGK----AAKGSK---------------- 903

  Fly  1258 FASKSLRNRYGNYSLTITTR-DMGLPANIVHNTLDICVSDFNDHAPVFVRPLHNTTVRIPENATV 1321
              ||..:::.......:... |.||..::..|.:    ||....:|         .:.:|.|...
  Rat   904 --SKGKKSKSPKPVKPVEDEDDTGLQKSLKFNLM----SDAPGDSP---------RIHLPLNYPP 953

  Fly  1322 GTLILQAYASDGDMGQNALVRYRLKPDPLGSYKMFEVDGSTGELFLKEQLNREKQKIHEIRIEAY 1386
            |:         .|:|::    || ...||.|.::             :..:....|.|::     
  Rat   954 GS---------PDLGRH----YR-SNSPLPSIQL-------------QPQSPSASKKHQV----- 986

  Fly  1387 DQGLP-----------TSLSSDLDLTIYVRNVNDYE-----PQFMVNEI---SVNF--------- 1423
            .|.||           ||..|:        ..:||.     |::...::   .|.|         
  Rat   987 VQDLPPANTFVGTGDTTSTGSE--------QYSDYSYRTNPPKYPSKQLPHRRVTFSATSQAQEL 1043

  Fly  1424 ---TEHS--DPGSERIKLPDTIDKDQLELDDPNDTPSQVCYFIVNGNEAGYFRLDPETHILTVDR 1483
               ::||  |.|.|..:.|.:.......| .|...|           |..|.|..|:..|..::.
  Rat  1044 QDPSQHSYYDSGLEESETPSSKSSSGPRL-GPLALP-----------EDHYERTTPDGSIGEMEH 1096

  Fly  1484 -ELDREVIANFTLYVRATENCRNDSISGGEKRRRMGIEINNRLGGIVHNQQFGYD-------RFK 1540
             |.|...:.:..:....|..|                            .:||:.       :..
  Rat  1097 PENDLRPLPDVAMTGTCTREC----------------------------SEFGHSDTCWMPGQSS 1133

  Fly  1541 HSRQLRSTESNEYGPEDAELLSYEAY-DSSQEDPTGGLATTHPELDSTVIKVKVRVL 1596
            .||:.:|:.        .:|.::..| |...::|.|..:.:.|| |.......||:|
  Rat  1134 PSRRTKSSA--------LKLSTFVPYQDRGGQEPAGAGSPSPPE-DRNTKTAPVRLL 1181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad88CNP_731930.3 Cadherin_repeat 76..168 CDD:206637
Cadherin_repeat 179..276 CDD:206637 4/16 (25%)
Cadherin_repeat 287..388 CDD:206637 26/117 (22%)
Cadherin_repeat 397..506 CDD:206637 30/124 (24%)
Cadherin_repeat 514..617 CDD:206637 29/102 (28%)
Cadherin_repeat 625..742 CDD:206637 32/123 (26%)
Cadherin_repeat 751..853 CDD:206637 27/103 (26%)
Cadherin_repeat 865..976 CDD:206637 9/110 (8%)
Cadherin_repeat 985..1080 CDD:206637 30/96 (31%)
Cadherin_repeat 1090..1191 CDD:206637 25/117 (21%)
CA 1221..1302 CDD:214520 14/81 (17%)
Cadherin_repeat 1312..1409 CDD:206637 18/107 (17%)
Cadherin_repeat 1418..>1502 CDD:206637 19/101 (19%)
Cadherin_repeat 1617..1710 CDD:206637
Pcdh1XP_038953281.1 Cadherin_2 52..131 CDD:400525 26/108 (24%)
Cadherin_repeat 165..269 CDD:206637 30/124 (24%)
Cadherin_repeat 277..376 CDD:206637 29/102 (28%)
Cadherin_repeat 395..495 CDD:206637 32/120 (27%)
Cadherin_repeat 505..601 CDD:206637 36/225 (16%)
Cadherin_repeat 610..704 CDD:206637 30/96 (31%)
Cadherin_repeat 723..805 CDD:206637 18/81 (22%)
Protocadherin 808..1022 CDD:400603 50/298 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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