DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad88C and cdh23

DIOPT Version :9

Sequence 1:NP_731930.3 Gene:Cad88C / 41774 FlyBaseID:FBgn0038247 Length:1981 Species:Drosophila melanogaster
Sequence 2:XP_031762583.1 Gene:cdh23 / 100493009 XenbaseID:XB-GENE-957613 Length:3353 Species:Xenopus tropicalis


Alignment Length:1972 Identity:594/1972 - (30%)
Similarity:916/1972 - (46%) Gaps:274/1972 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 VIILTTLISLVASNRPPRFAIDGQSEIVLRLKESPETKVGTLIYTLKGYDPD---NDPLTFGKRN 104
            |:.:|.|..   ::..|:|  |..|:.|:.:.|...|  |..:..::..|||   |..:||....
 Frog  1401 VVSITVLDE---NDNSPQF--DPTSDSVVNVPEDCPT--GRRVALVQARDPDDGNNGLVTFSLTA 1458

  Fly   105 SHDSEIIRIENTGGNEAKIFLAKELDRELQDEYAIVLTLTDS----HYSDHNYVTQSFLLLVEDI 165
            .:.|.|..|..|.....::||.|.:|||:|:.|.:.:..:||    ..|::.....     |.|:
 Frog  1459 GNPSGIFEIRTTNNTLGEVFLIKSIDREVQELYTLKIQASDSGSPPRRSEYTLTVN-----VNDV 1518

  Fly   166 NDNVPTF-LPYQNAIEIPEGSAPGV-VSTLEATDADEGAYGQVVYYLQELDGDNDV-FSIATHQG 227
            |||.|.| .|:...:.:.|....|. |..:.|||.|:|....:.||:.:  |:.|: |.:.    
 Frog  1519 NDNPPVFDKPFGYNVSVYENVGGGTSVIRVNATDKDKGLNSVLSYYITQ--GNEDLTFRMD---- 1577

  Fly   228 KGILRLQKEL-------DYERKSLYQLRVLAIDRANQGPINTGTAAILVKVKDLEDQPPEFVE-V 284
                ||..|:       |.|::|.|:|.|...|..|  |..:.|..:.|.:.|..|..|.|.. |
 Frog  1578 ----RLTGEIATRPAPPDREKQSFYKLVVTVEDEGN--PALSATTTVYVTILDENDNSPVFKSPV 1636

  Fly   285 QAVARIAEDAPVGTKVLRVRAIDGDRGINNPIAYSLEANDL---FDINPHTGIVHTLTKLDREEQ 346
            ..|.|......:.:.:|...|:|.|.|.|..:.||:.|.::   |.||..||::..:.:||.|  
 Frog  1637 YEVTRDEGPLSLNSVILTTTAVDQDEGPNGTVTYSISAGNVQETFSINNATGLIRVVKELDYE-- 1699

  Fly   347 SDQVNGAHILRISATELSKSNTQMAPTTVRTEVTVIVSDVNDEIPTFGETVYR--CEVNENAQTN 409
              ...|.:.|.::||:.... .|...|:..| |.|.|:|:||..|||.:. |.  .|:.|.....
 Frog  1700 --VCLGRYTLIVTATDRCPI-VQRRLTSTAT-VLVNVNDINDNWPTFPKP-YEGPFEITEGQPGP 1759

  Fly   410 TPLNFIDEEVQNVVFDHDEGNNGTFRLFLDPPNDLFEIVPELAVNEANFMLRVKNSKSLDFEQFT 474
            ....|..:       |.|.|.||.....:...    :::.:..::.....|||:....||.|...
 Frog  1760 RVATFKAD-------DKDSGLNGQVEYSIVGG----DLLGDFVISSVEGDLRVRKDYELDRENIA 1813

  Fly   475 EVNFTIFAREVDEPSRWSSAHVQIFIRDQNDNFPEFSQTIYNASVLENSEQDTIITHVQAVDVDS 539
            ..|.||.|::...|...|:|.|:|.:.|.|||.|.......|.|:.||:...|.||.:.|.|.|:
 Frog  1814 FYNITIMAKDRGNPPFSSTAVVEIRVLDINDNDPILLNLPQNISISENTPVSTPITRILASDADT 1878

  Fly   540 GDYGTMGIRYTNLRGGIAHLLNLNPITGVITIKQAGGTAFDREIISRHYLTVEAID---NAGQGN 601
            |....:....|  .|.:.:..::|..||::.:.:    ..|||.||.:.||:...|   ||....
 Frog  1879 GRNALLTFNIT--AGNLENAFSINENTGIVYVNR----QLDREKISEYKLTITVKDNPENARNSR 1937

  Fly   602 RNTAQIIVDILDVNDNAPTFPQRQYETKLLENQAEFETPL-----QLEARDADLNGTENSQVTYE 661
            |:...:||.|.|.|||.|.|.|..|..:|.||..| .||:     .:.|.|.|:.  .|:.|:|.
 Frog  1938 RDFDVLIVTISDENDNRPLFTQGSYLAELTENSPE-GTPITVLNGPVLALDNDIG--SNAVVSYR 1999

  Fly   662 IVEGLYRSNFTIDPQSGL--LRPVHSFDFEELVDGSSRRSDPYTGGSFSIREIDLLVRARDSGIP 724
            :: |...:.|||:..:|:  :|.....|.|                ||....:||.:.|.|.|  
 Frog  2000 LL-GAQINLFTINNSTGVVTVRAGKVIDRE----------------SFLNPILDLTLVAEDIG-- 2045

  Fly   725 MLSTVVPVLIYVQDVNDNAPIFQQSFYAKTVPEDLPGGSSVLQVTAIDRDGSAPNNVVVYRIQTG 789
            .|::...:::.|.|.|||.|||..|.....:.|:.|.|.||::|||.|.| |..|..:.|||::|
 Frog  2046 KLNSTARLVLTVLDANDNRPIFSPSSVTVHLRENSPPGFSVVKVTATDAD-SGINQQLSYRIESG 2109

  Fly   790 AGDKFIINSETGVISVAHGANLDPDLTESKRSLYTLSVIALDGGLGNSQLMTTCTVNISIQDVNN 854
            |.|:|:|::.||||.|   ||:..|..|  :..|.|.|:|.|.|.  ..|..:.||:|.|.|||:
 Frog  2110 AQDRFLIDAFTGVIRV---ANVTVDREE--KDTYKLIVVATDQGA--VPLSGSITVSILIDDVND 2167

  Fly   855 KPP-VLKEMPALQILENTPVGTLVYRIQATDLDHKAILRYKLNPE------HCEGRTEEGALVKS 912
            .|| .:..:..:.:||:..|||:|..:.|.|.|        |||.      ......:..:|:.:
 Frog  2168 CPPEFVNPIQTVSVLESAEVGTVVAEVTAIDRD--------LNPRLEYYIIEILATDDTNSLIPN 2224

  Fly   913 SEYDFLGAFEVDSIEGTLKVVKLLDRERVEHIKLAITVEDLAA-AKGRQIA--EGFLSIQVLDEN 974
            .:    |.||::...|::.|...|:||.|....:.|:|.|.|: ...|.::  ...|::.:||.|
 Frog  2225 QQ----GVFEINFKTGSVMVKSNLNRELVATYDITISVYDNASEVVDRSVSAPNAKLTVNILDVN 2285

  Fly   975 DNNPKFRLPF----YRQSITENSINGAMIVNVLASDVDK--NRTITYALEGNPTYRSLMHLDPQT 1033
            ||.|:|| ||    :.:.|.|.:..|..:::|.|.|.||  |..|||:|........|...|...
 Frog  2286 DNTPRFR-PFGVTAFTERIVEGATPGTTLISVSAVDPDKGPNGQITYSLHNLVPAGYLQLEDNMA 2349

  Fly  1034 GEIVVASKIDHEQHQWLNFSVRATDSGIPARSSLVDVYITVLDENDNNPYFVGGSKNYTISENAA 1098
            |:|:....:|:||.|||||:|||:|:|.|.||:.|.||:.::|.|||||.|...|....:.|:..
 Frog  2350 GKIIANRTVDYEQVQWLNFTVRASDNGSPRRSAEVPVYLQIVDINDNNPIFSQSSYQKPVFEDIQ 2414

  Fly  1099 PGTRVATLQAGDADSGDFGKITFLMDRISSQGKFTIDADTGVLTVADRLDRESKDSYNLVIEAWD 1163
            .|..|..::|.|||||.|..|.:.:  :..:|||.|:..||.:.:...||||.||.|.|...|.|
 Frog  2415 LGATVLQIKATDADSGRFALIQYSL--VDGEGKFGINPTTGDIYILSTLDREKKDHYTLTAIARD 2477

  Fly  1164 NYQFGFLAGESRNAFKQVFISILDENDNPPEVDLPMSCVLITEYHELHERVASIVGKDADDPTTP 1228
            |.  |.:|...|....||.|::||.||..|:.........:.|.......|.::...|.|:.   
 Frog  2478 NP--GDIASNRRENSVQVLITVLDVNDCRPQFSKSQFSTSVYENEPEGTSVITMSATDLDEG--- 2537

  Fly  1229 NGRLDFAITRGNKDGM-FELRQIDAWNAQIFASKSLRNRYGNYSLTITTRDMGLPANIVHNTLDI 1292
                |..:...|.:|. .|...||. ::.:..|:.|...:..::||:...|.|.|.......|.:
 Frog  2538 ----DNGVVTYNLEGPGSEAFLIDK-DSGLITSRRLLQSFERFNLTVVATDKGRPPLWGTTMLKV 2597

  Fly  1293 CVSDFNDHAPVFVRPLHNTTVRIPENATVGTLILQAYASDGDMGQNALVRYRLKPDPLGS--YKM 1355
            .|.|.||:.||||||.:.|.:.|.|...:.:.:.:.||:|.|.|.|..|||.|.....|:  ::.
 Frog  2598 DVIDVNDNRPVFVRPPNGTILHIKEEIPLKSTVYEVYATDNDEGLNGAVRYNLLKTGAGTKDWEY 2662

  Fly  1356 FEVDGSTGELFLKEQLNREKQKIHEIRIEAYDQGLPTSLSSDLDLTIYVRNVNDYEPQFM----- 1415
            |.:|.::|.:....:|:||||.::.:.|.|||.|.|....:.|.|.:.:.:::|.||.|:     
 Frog  2663 FTIDSTSGLIQTALRLDREKQAMYNLIIVAYDLGQPVPYETMLPLQVALDDIDDNEPAFIRPPRG 2727

  Fly  1416 -VNEISVNFTEHSDPGSERIKLPDTIDKDQLELDDPNDTPSQVCYFIVNGNEAGYFRLDPETHIL 1479
             :...:::..|||.||:....:...:|.|:       .:.:.|.|||..||:...|.|.||.. |
 Frog  2728 ALQYQTLSVREHSKPGTVVGNVSGAVDVDE-------GSNAIVYYFIATGNQDNNFLLIPEGK-L 2784

  Fly  1480 TVDRELDREVIANFTLYVRATENCRNDSISGGEKRRRMGIEINNRLGGIVHNQQFGYDRFKHSRQ 1544
            ||.:.||||....:::.|:|:.|                                          
 Frog  2785 TVLKNLDREKEPYYSIIVKASSN------------------------------------------ 2807

  Fly  1545 LRS-TESNEYGPEDAELLSYEAYDSSQEDPTGGLATTHPELDSTVIKVKVRVLDINDNPPRFRSK 1608
             || |..|..|         :.:|              |..|||:.:|:|.:.||||.||||...
 Frog  2808 -RSWTPGNSLG---------KKFD--------------PATDSTLQEVRVYLEDINDQPPRFTKP 2848

  Fly  1609 IFTGGITTNADFGLKFMRVEATDADEGDNGRIGYYQVGEIRQTLSEGLENVR-KAPFLLDQETGE 1672
            .:|.|:.|:|..|.:.::|.|.|||.|:|..: :|.:..||.......::|. |..|.::..||.
 Frog  2849 EYTAGVATDAKVGSELIKVLAVDADVGNNSLV-FYSILGIRYIKLNSNDSVEVKNIFAIENTTGI 2912

  Fly  1673 VQLNFD------PQKGMKGYFDFVVLANDTSGMKDVAHVFIYLLREDQKVRFVFRLQPDELRSRV 1731
            |: .||      |     |||...:.|.|.:|..|.|.|.||:||:||:::.|....||.:|...
 Frog  2913 VR-TFDLFTAYSP-----GYFIVDIKAVDLAGHNDTAVVGIYILRDDQRLKIVINEIPDRVRGFE 2971

  Fly  1732 DSFRDTLSNITESIVNIDEIKVHENKDGSVDKTKTDLYMHLVEREDNSIYEVSEVLKLIDSHIES 1796
            :.|...|||||.:|||.|:::.|.:|.|.|:..:||:.:|:|.|:.|.|.:|..|:::||.:.|.
 Frog  2972 EEFIRLLSNITGAIVNTDDVQFHVDKKGRVNFAQTDMLIHVVNRDTNRILDVERVIQMIDENKEQ 3036

  Fly  1797 LNGLFKELNVLDTQAAEAQLLTAGPSRGPLFVWLIFTNLFLATLLVVTIALCASQRNGYRRQLRA 1861
            |..||:..||:|.|.|.........|...:.:.::...||||.:|.  |.:....|..::|:|:|
 Frog  3037 LRNLFRNYNVMDVQPATTAQAPEDLSALQMAIIILAILLFLAAMLF--IFMNWYYRTVHKRKLKA 3099

  Fly  1862 AKVNIFRGHSSMSLQDAQEPATRVPNTNKHSVQGSNPIWLKGYDNEWFKSEESGSIGGHDSLDDN 1926
            ...........|.:.|       :|||||:|.:|:||:||    :.:.::.|..:...|:     
 Frog  3100 IVAGSTGNRGFMDILD-------MPNTNKYSFEGANPVWL----DPFCRNMELAAQAEHE----- 3148

  Fly  1927 FLAVATQDMHETLKGTAKLFNN 1948
                  .|:.|.|.....|:|:
 Frog  3149 ------DDLPENLSDITDLWNS 3164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad88CNP_731930.3 Cadherin_repeat 76..168 CDD:206637 26/98 (27%)
Cadherin_repeat 179..276 CDD:206637 28/105 (27%)
Cadherin_repeat 287..388 CDD:206637 30/103 (29%)
Cadherin_repeat 397..506 CDD:206637 26/110 (24%)
Cadherin_repeat 514..617 CDD:206637 32/105 (30%)
Cadherin_repeat 625..742 CDD:206637 32/123 (26%)
Cadherin_repeat 751..853 CDD:206637 41/101 (41%)
Cadherin_repeat 865..976 CDD:206637 31/119 (26%)
Cadherin_repeat 985..1080 CDD:206637 38/96 (40%)
Cadherin_repeat 1090..1191 CDD:206637 37/100 (37%)
CA 1221..1302 CDD:214520 20/81 (25%)
Cadherin_repeat 1312..1409 CDD:206637 29/98 (30%)
Cadherin_repeat 1418..>1502 CDD:206637 26/83 (31%)
Cadherin_repeat 1617..1710 CDD:206637 32/99 (32%)
cdh23XP_031762583.1 Cadherin_repeat 43..129 CDD:206637
Cadherin_repeat 137..232 CDD:206637
Cadherin_repeat 241..345 CDD:206637
Cadherin_repeat 353..455 CDD:206637
Cadherin_repeat 464..556 CDD:206637
Cadherin_repeat 564..666 CDD:206637
Cadherin_repeat 674..773 CDD:206637
Cadherin_repeat 781..885 CDD:206637
Cadherin_repeat 893..989 CDD:206637
Cadherin_repeat 998..1097 CDD:206637
Cadherin_repeat 1105..1202 CDD:206637
Cadherin_repeat 1217..1307 CDD:206637
Cadherin_repeat 1316..1412 CDD:206637 3/13 (23%)
Cadherin_repeat 1423..1521 CDD:206637 28/104 (27%)
Cadherin_repeat 1531..1628 CDD:206637 28/108 (26%)
Cadherin_repeat 1636..1738 CDD:206637 32/107 (30%)
Cadherin_repeat 1750..1845 CDD:206637 25/105 (24%)
Cadherin_repeat 1853..1953 CDD:206637 32/105 (30%)
Cadherin_repeat 1961..2063 CDD:206637 32/123 (26%)
Cadherin_repeat 2071..2167 CDD:206637 42/103 (41%)
Cadherin_repeat 2178..2287 CDD:206637 31/120 (26%)
Cadherin_repeat 2299..2396 CDD:206637 38/96 (40%)
Cadherin_repeat 2404..2502 CDD:206637 37/101 (37%)
Cadherin_repeat 2511..2605 CDD:206637 21/101 (21%)
Cadherin_repeat 2618..2717 CDD:206637 29/98 (30%)
Cadherin_repeat 2733..2840 CDD:206637 41/180 (23%)
Cadherin_repeat 2849..2950 CDD:206637 35/107 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 179 1.000 Domainoid score I3484
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D12697at33208
OrthoFinder 1 1.000 - - FOG0007436
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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