Sequence 1: | NP_731930.3 | Gene: | Cad88C / 41774 | FlyBaseID: | FBgn0038247 | Length: | 1981 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_031762583.1 | Gene: | cdh23 / 100493009 | XenbaseID: | XB-GENE-957613 | Length: | 3353 | Species: | Xenopus tropicalis |
Alignment Length: | 1972 | Identity: | 594/1972 - (30%) |
---|---|---|---|
Similarity: | 916/1972 - (46%) | Gaps: | 274/1972 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 43 VIILTTLISLVASNRPPRFAIDGQSEIVLRLKESPETKVGTLIYTLKGYDPD---NDPLTFGKRN 104
Fly 105 SHDSEIIRIENTGGNEAKIFLAKELDRELQDEYAIVLTLTDS----HYSDHNYVTQSFLLLVEDI 165
Fly 166 NDNVPTF-LPYQNAIEIPEGSAPGV-VSTLEATDADEGAYGQVVYYLQELDGDNDV-FSIATHQG 227
Fly 228 KGILRLQKEL-------DYERKSLYQLRVLAIDRANQGPINTGTAAILVKVKDLEDQPPEFVE-V 284
Fly 285 QAVARIAEDAPVGTKVLRVRAIDGDRGINNPIAYSLEANDL---FDINPHTGIVHTLTKLDREEQ 346
Fly 347 SDQVNGAHILRISATELSKSNTQMAPTTVRTEVTVIVSDVNDEIPTFGETVYR--CEVNENAQTN 409
Fly 410 TPLNFIDEEVQNVVFDHDEGNNGTFRLFLDPPNDLFEIVPELAVNEANFMLRVKNSKSLDFEQFT 474
Fly 475 EVNFTIFAREVDEPSRWSSAHVQIFIRDQNDNFPEFSQTIYNASVLENSEQDTIITHVQAVDVDS 539
Fly 540 GDYGTMGIRYTNLRGGIAHLLNLNPITGVITIKQAGGTAFDREIISRHYLTVEAID---NAGQGN 601
Fly 602 RNTAQIIVDILDVNDNAPTFPQRQYETKLLENQAEFETPL-----QLEARDADLNGTENSQVTYE 661
Fly 662 IVEGLYRSNFTIDPQSGL--LRPVHSFDFEELVDGSSRRSDPYTGGSFSIREIDLLVRARDSGIP 724
Fly 725 MLSTVVPVLIYVQDVNDNAPIFQQSFYAKTVPEDLPGGSSVLQVTAIDRDGSAPNNVVVYRIQTG 789
Fly 790 AGDKFIINSETGVISVAHGANLDPDLTESKRSLYTLSVIALDGGLGNSQLMTTCTVNISIQDVNN 854
Fly 855 KPP-VLKEMPALQILENTPVGTLVYRIQATDLDHKAILRYKLNPE------HCEGRTEEGALVKS 912
Fly 913 SEYDFLGAFEVDSIEGTLKVVKLLDRERVEHIKLAITVEDLAA-AKGRQIA--EGFLSIQVLDEN 974
Fly 975 DNNPKFRLPF----YRQSITENSINGAMIVNVLASDVDK--NRTITYALEGNPTYRSLMHLDPQT 1033
Fly 1034 GEIVVASKIDHEQHQWLNFSVRATDSGIPARSSLVDVYITVLDENDNNPYFVGGSKNYTISENAA 1098
Fly 1099 PGTRVATLQAGDADSGDFGKITFLMDRISSQGKFTIDADTGVLTVADRLDRESKDSYNLVIEAWD 1163
Fly 1164 NYQFGFLAGESRNAFKQVFISILDENDNPPEVDLPMSCVLITEYHELHERVASIVGKDADDPTTP 1228
Fly 1229 NGRLDFAITRGNKDGM-FELRQIDAWNAQIFASKSLRNRYGNYSLTITTRDMGLPANIVHNTLDI 1292
Fly 1293 CVSDFNDHAPVFVRPLHNTTVRIPENATVGTLILQAYASDGDMGQNALVRYRLKPDPLGS--YKM 1355
Fly 1356 FEVDGSTGELFLKEQLNREKQKIHEIRIEAYDQGLPTSLSSDLDLTIYVRNVNDYEPQFM----- 1415
Fly 1416 -VNEISVNFTEHSDPGSERIKLPDTIDKDQLELDDPNDTPSQVCYFIVNGNEAGYFRLDPETHIL 1479
Fly 1480 TVDRELDREVIANFTLYVRATENCRNDSISGGEKRRRMGIEINNRLGGIVHNQQFGYDRFKHSRQ 1544
Fly 1545 LRS-TESNEYGPEDAELLSYEAYDSSQEDPTGGLATTHPELDSTVIKVKVRVLDINDNPPRFRSK 1608
Fly 1609 IFTGGITTNADFGLKFMRVEATDADEGDNGRIGYYQVGEIRQTLSEGLENVR-KAPFLLDQETGE 1672
Fly 1673 VQLNFD------PQKGMKGYFDFVVLANDTSGMKDVAHVFIYLLREDQKVRFVFRLQPDELRSRV 1731
Fly 1732 DSFRDTLSNITESIVNIDEIKVHENKDGSVDKTKTDLYMHLVEREDNSIYEVSEVLKLIDSHIES 1796
Fly 1797 LNGLFKELNVLDTQAAEAQLLTAGPSRGPLFVWLIFTNLFLATLLVVTIALCASQRNGYRRQLRA 1861
Fly 1862 AKVNIFRGHSSMSLQDAQEPATRVPNTNKHSVQGSNPIWLKGYDNEWFKSEESGSIGGHDSLDDN 1926
Fly 1927 FLAVATQDMHETLKGTAKLFNN 1948 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Cad88C | NP_731930.3 | Cadherin_repeat | 76..168 | CDD:206637 | 26/98 (27%) |
Cadherin_repeat | 179..276 | CDD:206637 | 28/105 (27%) | ||
Cadherin_repeat | 287..388 | CDD:206637 | 30/103 (29%) | ||
Cadherin_repeat | 397..506 | CDD:206637 | 26/110 (24%) | ||
Cadherin_repeat | 514..617 | CDD:206637 | 32/105 (30%) | ||
Cadherin_repeat | 625..742 | CDD:206637 | 32/123 (26%) | ||
Cadherin_repeat | 751..853 | CDD:206637 | 41/101 (41%) | ||
Cadherin_repeat | 865..976 | CDD:206637 | 31/119 (26%) | ||
Cadherin_repeat | 985..1080 | CDD:206637 | 38/96 (40%) | ||
Cadherin_repeat | 1090..1191 | CDD:206637 | 37/100 (37%) | ||
CA | 1221..1302 | CDD:214520 | 20/81 (25%) | ||
Cadherin_repeat | 1312..1409 | CDD:206637 | 29/98 (30%) | ||
Cadherin_repeat | 1418..>1502 | CDD:206637 | 26/83 (31%) | ||
Cadherin_repeat | 1617..1710 | CDD:206637 | 32/99 (32%) | ||
cdh23 | XP_031762583.1 | Cadherin_repeat | 43..129 | CDD:206637 | |
Cadherin_repeat | 137..232 | CDD:206637 | |||
Cadherin_repeat | 241..345 | CDD:206637 | |||
Cadherin_repeat | 353..455 | CDD:206637 | |||
Cadherin_repeat | 464..556 | CDD:206637 | |||
Cadherin_repeat | 564..666 | CDD:206637 | |||
Cadherin_repeat | 674..773 | CDD:206637 | |||
Cadherin_repeat | 781..885 | CDD:206637 | |||
Cadherin_repeat | 893..989 | CDD:206637 | |||
Cadherin_repeat | 998..1097 | CDD:206637 | |||
Cadherin_repeat | 1105..1202 | CDD:206637 | |||
Cadherin_repeat | 1217..1307 | CDD:206637 | |||
Cadherin_repeat | 1316..1412 | CDD:206637 | 3/13 (23%) | ||
Cadherin_repeat | 1423..1521 | CDD:206637 | 28/104 (27%) | ||
Cadherin_repeat | 1531..1628 | CDD:206637 | 28/108 (26%) | ||
Cadherin_repeat | 1636..1738 | CDD:206637 | 32/107 (30%) | ||
Cadherin_repeat | 1750..1845 | CDD:206637 | 25/105 (24%) | ||
Cadherin_repeat | 1853..1953 | CDD:206637 | 32/105 (30%) | ||
Cadherin_repeat | 1961..2063 | CDD:206637 | 32/123 (26%) | ||
Cadherin_repeat | 2071..2167 | CDD:206637 | 42/103 (41%) | ||
Cadherin_repeat | 2178..2287 | CDD:206637 | 31/120 (26%) | ||
Cadherin_repeat | 2299..2396 | CDD:206637 | 38/96 (40%) | ||
Cadherin_repeat | 2404..2502 | CDD:206637 | 37/101 (37%) | ||
Cadherin_repeat | 2511..2605 | CDD:206637 | 21/101 (21%) | ||
Cadherin_repeat | 2618..2717 | CDD:206637 | 29/98 (30%) | ||
Cadherin_repeat | 2733..2840 | CDD:206637 | 41/180 (23%) | ||
Cadherin_repeat | 2849..2950 | CDD:206637 | 35/107 (33%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 179 | 1.000 | Domainoid score | I3484 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D12697at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0007436 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.920 |