DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad88C and cdhr2

DIOPT Version :9

Sequence 1:NP_731930.3 Gene:Cad88C / 41774 FlyBaseID:FBgn0038247 Length:1981 Species:Drosophila melanogaster
Sequence 2:XP_031754706.1 Gene:cdhr2 / 100491782 XenbaseID:XB-GENE-1004777 Length:1320 Species:Xenopus tropicalis


Alignment Length:1209 Identity:334/1209 - (27%)
Similarity:555/1209 - (45%) Gaps:207/1209 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 IQVII-LTTLISLVASNRPPRFAIDGQSEIVLRLKESPE-TKVGTLIYTLKGYDPDNDPLTFGKR 103
            ||::: |..::::.:.|..|.||.:..|..:      || |.:|..::.:...|.||||||: ..
 Frog    11 IQLLLPLVFMVTVSSQNTAPEFASNMTSAFI------PEDTPLGKCVFWIVARDADNDPLTY-SM 68

  Fly   104 NSHDSEIIRIENTGGNEAKIFLAKELDRELQDEYAIVLTLTDSHYSDHNYVTQSFLLLVEDINDN 168
            ...||....:....|   ::.||..||.|.:::...::.:.|   ..:..|.:.|.::|||.|||
 Frog    69 EGQDSYYFNVNLMTG---EVQLALPLDYESKNKLNTMIKVQD---EINRPVIRQFPVIVEDRNDN 127

  Fly   169 VPTFL--PYQNAI--EIPEGSAPGVVSTLEATDADEGAYGQVVYYLQELDGD----NDVFSIATH 225
            .|.||  ||:.:|  :.|.||   :|.::.|.|.|:.....|.|.:.|:..:    |::|.|..:
 Frog   128 DPVFLGIPYEASIREDQPLGS---IVFSVSAVDFDDDGRVPVTYSIDEIIPNDLQSNNLFYILLN 189

  Fly   226 QGKGILRLQKELDYERKSL-YQLRVLAIDRA----NQGPINTGTAAILVKVKDLEDQPPEFVEVQ 285
               |.:.|...|:|..||: ||:.:.|.|:.    |.....:..|.:.:||.||.|..|:|:...
 Frog   190 ---GSIILNDTLNYNEKSIFYQMTINATDKGGLFHNHFMYRSTLAYVSLKVIDLPDLDPQFINAP 251

  Fly   286 AVARIAEDAPVGTKVLRVRAIDGDRGINNPIAYSLE---ANDLFDINPHTGIVHTLTKLDRE--- 344
            ....|.|:..:||.:.||.|||||||||:.|.||::   .:.|||||..:|.:....|:|||   
 Frog   252 YSVSIEENIALGTTIFRVTAIDGDRGINDEIQYSIQDSSRHGLFDINSKSGEIFVTAKIDREALV 316

  Fly   345 EQSDQVNGAHILRISATELSKS-NTQMAPTTVRTEVTVIVSDVNDEIPTFGETVYRCEVNENAQT 408
            :..:||    :|.:.|.|.:.: |.:.|.:|  |.|||.|.|:||..|.|    |.||:::...:
 Frog   317 QDGEQV----LLTVMAQEKNLNVNAEKATST--TTVTVRVLDINDNKPNF----YNCEIDDCDFS 371

  Fly   409 NTP-LNFIDE------------EVQNVVFDHDEGNNGTFRLFL-DPPNDLFEIVPELAVNEANFM 459
            ..| |:|:.|            :::....|.|:..||.|.|:| ....|.|.:.|....|.....
 Frog   372 AAPTLSFLGEIEEHSSIRVPVAKLKITGHDPDKDKNGNFNLYLRGKDQDCFTVSPARVQNTGLIQ 436

  Fly   460 LRVKNSKSLDFEQFTEVNFTIFAREVDEPSRWSSAHVQIFIRDQNDNFPEFSQTIYNASVLENSE 524
            :.||:|.::|:|:..::...|.|.:.......|.|.|.|.|.|.||:.|||||..|...|:||..
 Frog   437 VLVKDSVAIDYEKVHQMEVEIVANDTGLQDCCSYATVTIDIIDINDHTPEFSQDTYYLEVMENCP 501

  Fly   525 QDTIITHVQAVDVDSGDYGTMGIRYTNLRGGIAHLLNLNPITGVITIKQAGGTAFDREIISRHYL 589
            ..|.|..:.|.|:|||:.|.  |.|..|...|..:.:::..:|.|.  ...|...|||..|.:|.
 Frog   502 DGTQIGTITATDLDSGELGK--ITYQLLPESIRQIFHVDSDSGEII--AVNGNLLDRERRSLYYA 562

  Fly   590 TVEAIDNAGQGNRNTAQIIVDILDVNDNAPTFPQRQYETKLLENQAEFETPLQLEARDADLNGTE 654
            |::|.|  |.....||.:.:.|||.||..|| ....|...:.||..:..  :|:||.|||...|.
 Frog   563 TLQAAD--GLNATGTALLEITILDENDEIPT-AIGSYNIFVNENTDDVR--IQIEAFDADEPNTN 622

  Fly   655 NSQVTYEIVEGLYRSNFTIDPQSGLLRPVHSFDFEELVDGSSRRSDPYTGGSFSIREIDLLVRAR 719
            ||::.:|::..:..|||:::..:||:..:...|.|.:        |....|.     |.|.|:..
 Frog   623 NSRIEFELLPSVLSSNFSVNVTTGLITSIGPLDREAI--------DEKDNGC-----IVLTVKLY 674

  Fly   720 DSGIPMLSTVVPVLIYVQDVNDNAPIFQQSFYAKTVPED-LPGGSSVLQVTAIDRDGSAPNNVVV 783
            |.|:|.||:.|.|.|.|:|:|||.|:|.::.|...|.|. :.....:|.|:  |:|.:..||.|.
 Frog   675 DLGVPSLSSEVNVTINVEDLNDNVPVFSKTVYDFFVNESTIAAQVGILLVS--DQDQTELNNRVS 737

  Fly   784 YRIQTGAGDKFIINSE-------TGVISVAHGANLDPDLT---ESKRSLYTLSVIALDGGLGNSQ 838
            :||..|....|||.::       .|::|      ||||:.   |:::: |||.:.|.|.||....
 Frog   738 FRISQGGSGNFIIRNQKVESGLYNGILS------LDPDVMLDYETQKN-YTLIIEAQDNGLHGVS 795

  Fly   839 LMTTCTVNISIQDVNNKPPVL--KEMPALQILENTPVG-TLVYRIQATDLDHKAILRYKLNPEHC 900
            ...|.|.::.:.|:|::||.:  ..:..|.:|||..|| .|:..::|.|.|....|.::.....|
 Frog   796 HTATATASVQVLDLNDEPPYVDPSSLNNLFLLENRTVGLELLTTLKAHDPDTIHELEFQALSLQC 860

  Fly   901 EGRTEEGALVKSSEYDFL-----GAFEVDSIEGTLKVVKLLDRERVEHIKLAITVEDLAAAKGRQ 960
               .:.|..:.:..||::     |...|:..|       ::|.|..:.:.:.:.|||.....|.:
 Frog   861 ---FKNGNDIGNICYDWIWLAPNGELFVNDTE-------VVDYELCDVMVMMLRVEDKLTLIGDR 915

  Fly   961 IAEG-FLSIQVLDENDNNPKF------------------RLPFYRQSITENSINGAMIVNVLASD 1006
            .::. .|.:.:||.|||.|:|                  ::...:.:..::.:|..:..::.:.:
 Frog   916 YSKNESLRVDILDVNDNAPEFLDVDEVFVVVPDVAPIDYQVALVKATDKDSGLNAVLKFSIASVE 980

  Fly  1007 VDKNRTITYALEGNPTYRSLMHL---------DPQTGEIVVASKIDHEQHQWLNFSVRATDSGIP 1062
            .         :.|:.| |.|:::         :...|.|.|||.:|            ||..|  
 Frog   981 F---------ISGDST-RPLLNIFTIVTTSEKEIYQGSIRVASSLD------------ATLKG-- 1021

  Fly  1063 ARSSLVDVYITVLDENDNNPYFVGGSKNYTISENAAPGTRVATLQAGDADSGDFGKITFLMDRIS 1127
                  :..:||:.|:..||              :...|||..:.|.|    :..::|....:.:
 Frog  1022 ------NYRVTVIAEDSGNP--------------SLTATRVLDIFAVD----ESYRVTLKFSKTA 1062

  Fly  1128 SQGKFTIDADTGVLTVADRLD------RESKDSYNLVIE 1160
            .:.:.|.:.....||:|.:..      ::.:.|..::|:
 Frog  1063 DEVRETSEEIKRALTMATKATVYVAQIKDLEPSSKMIIQ 1101

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad88CNP_731930.3 Cadherin_repeat 76..168 CDD:206637 26/92 (28%)
Cadherin_repeat 179..276 CDD:206637 30/107 (28%)
Cadherin_repeat 287..388 CDD:206637 42/107 (39%)
Cadherin_repeat 397..506 CDD:206637 32/122 (26%)
Cadherin_repeat 514..617 CDD:206637 34/102 (33%)
Cadherin_repeat 625..742 CDD:206637 36/116 (31%)
Cadherin_repeat 751..853 CDD:206637 33/112 (29%)
Cadherin_repeat 865..976 CDD:206637 28/117 (24%)
Cadherin_repeat 985..1080 CDD:206637 17/103 (17%)
Cadherin_repeat 1090..1191 CDD:206637 12/77 (16%)
CA 1221..1302 CDD:214520
Cadherin_repeat 1312..1409 CDD:206637
Cadherin_repeat 1418..>1502 CDD:206637
Cadherin_repeat 1617..1710 CDD:206637
cdhr2XP_031754706.1 Cadherin_repeat 38..127 CDD:206637 27/101 (27%)
Cadherin_repeat 135..242 CDD:206637 32/112 (29%)
Cadherin_repeat 251..>332 CDD:206637 33/84 (39%)
Cadherin_repeat 381..483 CDD:206637 26/101 (26%)
Cadherin_repeat 491..587 CDD:206637 33/101 (33%)
Cadherin_repeat 595..697 CDD:206637 36/116 (31%)
Cadherin_repeat 705..811 CDD:206637 33/114 (29%)
Cadherin_repeat 941..1045 CDD:206637 22/147 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 56 1.000 Domainoid score I10864
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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