DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad88C and dchs2

DIOPT Version :10

Sequence 1:NP_731930.3 Gene:Cad88C / 41774 FlyBaseID:FBgn0038247 Length:1981 Species:Drosophila melanogaster
Sequence 2:XP_012811431.2 Gene:dchs2 / 100485624 XenbaseID:XB-GENE-6048959 Length:3475 Species:Xenopus tropicalis


Alignment Length:2080 Identity:509/2080 - (24%)
Similarity:822/2080 - (39%) Gaps:510/2080 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 TTLISLVASN-RPPRF-AIDGQSEIVLRLKESPETKVGTLIYTLKGYDPD----NDPLTFGKRNS 105
            |.|:|:...| :||.| ..:|....:     |..|.:||.:..||..|.|    |..:|:..:.|
 Frog   651 TLLLSVTDLNDQPPMFLQPEGYQATI-----SEATSIGTAVLMLKAQDLDEDGPNSRVTYSLQES 710

  Fly   106 HDSEIIRIE-NTGGNEAKIFLAKELDRELQDEYAIVLTLTDSHYSDHNYVTQSFLLLVEDINDNV 169
            .:|....:| .||    .:.:|:.||.|......:|...|| |.|.....:.:..:.|||.|||.
 Frog   711 QNSSSFILEPGTG----VLSIAQLLDHESAPVLNLVAVATD-HGSPPLSSSCTITITVEDTNDND 770

  Fly   170 PTFLPYQNAIEIPEGSAPG-VVSTLEATDADEGAYGQVVYYLQELDG-----DNDVFSIATHQGK 228
            |.||.....:.:.|.:..| ....::|||||.|.:||:.|.:  .||     ::..|.|....|:
 Frog   771 PIFLQQFYNVSLQEHTVLGHCFLQVKATDADSGPFGQIHYSV--YDGFHNTKESQSFRIDPDSGR 833

  Fly   229 GILRLQKELDYER-KSLYQLRVLAIDRANQGPINTGTAAILVKVKDLEDQPPEFVEVQAVARIAE 292
              :.:..::|.|. .:.|.|.|.|.|   :|.: :..|.:.|.::|:.|..|.|.....|..|:.
 Frog   834 --ICVSNDIDKESGPTSYDLLVKAED---EGGL-SAQAFVRVDIEDINDNAPVFEPSTYVTSISS 892

  Fly   293 DAPVGTKVLRVRAIDGDRGINNPIAYSL---EANDLFDINPHTGIVHTLTKLDREEQS------- 347
            ....||::|.|.|||.|.|:...:.|.|   |.:.||.|:..|||::.::.|...|.|       
 Frog   893 HTQPGTEILNVMAIDRDEGLFGDVTYELLSGEHSSLFTIDSSTGIIYLISVLSHLEDSWVSLSVA 957

  Fly   348 DQVNGAHILRISAT-ELSKSNTQMAPTTV-RTEVTVIVSDVNDEIPTFGETVYRCEVNENAQTNT 410
            .:..|.....::|| .::...|..||... ::..|.:::   :::|. |..|...:..|      
 Frog   958 ARDKGGLTSAVNATVTMNILKTATAPAIFEKSRYTFVIA---EDVPK-GSAVGTVKARE------ 1012

  Fly   411 PLNFIDEEVQNVVFDHDEGNNGTFRLFLDPPNDLFEIVPELAVNEANFMLRVKNSKSLDFEQFTE 475
            |||.::..              ::|:.....:.:|.|..:..:        ::..|.||||....
 Frog  1013 PLNSLEPV--------------SYRIISGNVHQMFTIHTQFGI--------IRTQKELDFESLPL 1055

  Fly   476 VNFTIFAREVDEPSRWSSAHVQIFIRDQNDNFPEFSQTIYNASVLENSEQDTIITHVQAVDVDSG 540
            |..|: ..::...|.:||..|.:.|.|.|||.|.||......||.:|:...|.|...||.|:|||
 Frog  1056 VVLTV-QSQLGSSSVFSSTQVNVTITDANDNPPVFSSENERISVHQNTSPGTAIYIAQATDLDSG 1119

  Fly   541 DYG------------------TMGIRYTN--LRGGIAHLLNL------NPI-TGVITI------- 571
            ..|                  |.|:.|.|  |.....|:|.:      :|: :.::|:       
 Frog  1120 FNGQISYSIASENQDLFIIDSTFGVLYLNATLSSVREHVLLVLAEDYGHPVLSSLLTLTIIVEQN 1184

  Fly   572 KQAGGTAFDREI----------ISRHYLTVEA-------------------IDN----------- 596
            ||:...:|...:          |:.|.|.|:|                   ||:           
 Frog  1185 KQSNTLSFFNLVHRTEISETLPINSHILQVKAYTRNTQSTSSEIMYSLSPTIDSAPFRIHQSTGW 1249

  Fly   597 --------------------AGQGNRN-----TAQIIVDILDVNDNAPTFPQRQYETKLLENQAE 636
                                |..|:|.     ||.|||.|||.|||:|:|....:...:.|:...
 Frog  1250 IFLRRSVDYEKSKTHNLKVVATSGDREDQQTATASIIVKILDENDNSPSFDHATHFFTVNESPVP 1314

  Fly   637 FETPLQLEARDADLNGTENSQVTYEIV-EGLYRSNFTIDPQSGLLRPVHSFDFEELVDGSSRRSD 700
            ......::|.|.|  ...|.|::|.:: ||   :||.|..::|.:....|.|.|       |::.
 Frog  1315 HGVIGSIQAFDRD--SGNNGQLSYFLLSEG---NNFLISSKTGEIINCASLDHE-------RKAH 1367

  Fly   701 PYTGGSFSIREIDLLVRARDSGIPMLSTVVPVLIYVQDVNDNAPIFQQSFYAKTVPEDLPGGSS- 764
                     .|:::||  .|:|.|..:....|.|.|.|:|||.|.|.|....|.:...:..|.: 
 Frog  1368 ---------HELNVLV--TDNGTPRRNATTTVYIIVADLNDNKPYFPQLASGKQLHVKVMEGQAE 1421

  Fly   765 -VLQVTAIDRDGSAPNN--VVVYRIQTGAGDKFIINSETGVI--SVAHGANLDPDLTESKRSLYT 824
             :|..|...:|..|.||  ||.:.....:..:|:||:.||.|  :.|..|.|.|.        |.
 Frog  1422 PMLVATVYAKDPDAGNNGTVVYFFASDESFGQFVINASTGEIWTTKALSAKLRPQ--------YG 1478

  Fly   825 LSVIALDGG-------------------------------------------------------- 833
            |:|.|.|.|                                                        
 Frog  1479 LTVTASDQGTPPLVEHTVVNIEVISAFKEKTKTVSKIKTMKVPENTYPTQKIGSVISHEEAFLLS 1543

  Fly   834 ------LGNSQ-----LMTTCT-------------------------------------VNISIQ 850
                  |.|.:     ::.:.|                                     :.|.|:
 Frog  1544 SKMHYRLANEENKGHFVVDSLTGDVYVSRHLDFETISYYGLSIDIQEIDKISPPNLSVFLTIYIE 1608

  Fly   851 DVNNKPPVLKE-MPALQILENTPVGTLVYRIQATDLD---HKAILRYKLNPEHCEGRTEEGALVK 911
            |.|:..|:..: :..|.:.|:.|||||:|..:|.|.|   ..:.:||.|| .|..|.        
 Frog  1609 DTNDHRPLFPDHIIVLGVDEDVPVGTLLYTFKANDKDGSLENSKIRYSLN-THGTGE-------- 1664

  Fly   912 SSEYDFLGAFEVDSIEGTLKVVKLLDRERVEHIKLAITVEDLAA-AKGRQIAEGFLSIQVLDEND 975
                   ..|.:...||.|.....||||..|...|.:|..|.|| ...|:.....:.|.:.|.||
 Frog  1665 -------NPFFIHEWEGALTTANELDREMAESFVLTVTATDQAANISHRRCTSVIVRIVIQDIND 1722

  Fly   976 NNPK-FRLPFYRQSITENSINGAMIVNVLASDVDKNRT--ITYAL-EGNPTYRSLMHLDPQTGEI 1036
            |.|: ..||.  .|:.|::..|:::..::|.|.|:.|.  |.:.: |||.  :.:..||..||.:
 Frog  1723 NPPQVLSLPV--ASVMEDAQIGSLVHRIVAKDPDEGRNGKIGFHIKEGNA--QQVFLLDETTGWL 1783

  Fly  1037 VVASKIDHEQHQWLNFSVRATDSGIPARSSLVDVYITVLDENDNNPYFVGGSKNYTISENAAPGT 1101
            .:.|:||.|.......::.|.|.|||:.|....:.|:::|.|:..|.|..|.....:.||..||.
 Frog  1784 TLHSEIDREVQDHYILTILALDDGIPSLSVTQTLTISLIDVNNKTPTFTQGLYEAAVPENQDPGL 1848

  Fly  1102 RVATLQAGDADSGDFGKITFLMDRISSQGKFTIDADTGVLTVADRLDRESKDSYNLVIEAWDNYQ 1166
            .|..:.|.|.|.|:...:|:.:....:.|.|.|:.:||.|......|||.:|.:.:.:...|.  
 Frog  1849 YVIKVAAVDYDLGNNSVLTYEILPGPAYGHFRINPETGELVTTTVFDREQQDRFIIEVLVKDG-- 1911

  Fly  1167 FGFLAGESRNAFKQVFISILDENDNPPEVDLPMSCVLITEYHEL---HERVASIVGKDADDPTTP 1228
                .....::...:..|||||||:.|||..|...:.:.|..:|   |..:|:  .|||.:    
 Frog  1912 ----GSPPLSSTTAILCSILDENDHTPEVLFPDVEIRVPENQDLGIIHTVLAA--DKDAGN---- 1966

  Fly  1229 NGRLDFAITRGNKDGMFELRQIDAWNAQIFASKSL-RNRYGNYSLTITTRDMGLPANIVHNTLDI 1292
            ||||.|.||.||..|.|   .|:..:.|::|:::| |....::::|:...|:|.|.......|.|
 Frog  1967 NGRLHFQITDGNMGGYF---AINNTSGQLWATRTLDREDVSSFTITVECHDLGTPHRSTIAKLRI 2028

  Fly  1293 CVSDFNDHAPVFVRPLHNTTVRIPENATVGTLILQAYASDGDMGQNALVRYRLKPDPLGSYKMFE 1357
            .|.|.||:.|.|.:..:.|.||  |:..:|:.:|:..|||.|.|.|..:.|.|..|..|:   |.
 Frog  2029 TVLDENDNPPTFPKSQYRTLVR--EDLKIGSAVLKLQASDADEGLNKEIIYSLIDDTQGA---FT 2088

  Fly  1358 VDGSTGELFLKEQLNREKQKIHEIRIEAYDQGLPTSLSSDLDLTIYVRNVNDYEPQFMVNEISVN 1422
            |:.:||.:.....|:||.:..:..|:.|.|..|....|:.:.:.:|:.:|||..|.|..|.|.|.
 Frog  2089 VNRTTGNIVTIRTLDREVKHQYVFRVVASDCSLHNPKSATVKVLVYIEDVNDNSPVFTENPIHVL 2153

  Fly  1423 FTEHSDPGSERIKLPDTIDKDQLELDDPNDTP----SQVCYFIVNGNEAGYFRLDPETHILTVDR 1483
            .:            |..::...:.....:|..    ..|.|.::..|.  :|.:..|...:.:..
 Frog  2154 IS------------PKVLENKTIANVHASDVDLGLNGTVVYNLIKSNP--FFYITQEKGEVKLQM 2204

  Fly  1484 ELDREVIANFTLYVRATENCRNDSISGGEKRRRMGIEINNRLGGIVHNQQFGYDR---FKHSRQ- 1544
            .|..| .::..|.|:|::               :||..|...|.::.:.| |.|:   |.|:.. 
 Frog  2205 PLPAE-FSSTVLQVQASD---------------LGIPPNTVTGLVIIDIQ-GLDKEIAFVHNFYE 2252

  Fly  1545 ---LRSTESNE---------YGPEDAELLSYEAYDSSQE-----DP-TGGLATTHPEL------- 1584
               |.::|:..         :.|.| |::.|..:...::     :| ||.|....|.|       
 Frog  2253 AIILENSEAGTLVVTVKALYHNPND-EIIHYTVFSGDKKGAFNLNPITGDLMVKEPRLLDFETVN 2316

  Fly  1585 ------------DSTVIKVKVRVLDINDNPPRFRSKIFTGGITTNADFGLKFMRVEATDADEGDN 1637
                        .:|..:|.|.:.|.|||.|.|....:...::....|....::|.|.|.|.|.|
 Frog  2317 KFNLIISAESSQYTTYCRVTVFIQDDNDNAPVFDQLDYISFVSEGQPFNTFVIQVFAADGDSGIN 2381

  Fly  1638 GRIGYYQVGEIRQTLSEGLENVRKAPFLLDQETGEVQLNFDPQKGMKGYFDFVVLAND----TSG 1698
            |:|.|        ::..|.||   ..|:||...|.:..|....:.:|..:...|.|.|    :..
 Frog  2382 GQIDY--------SIISGNEN---NAFVLDSRHGILSTNVILDREIKSSYRLTVQATDRGSPSCS 2435

  Fly  1699 MKDVAHVFI---------------YLLREDQKVRFVF--------RLQPD-----------ELRS 1729
            ...|..|.|               .|:.||....:..        .|:||           .|:.
 Frog  2436 STSVVTVLILDINDNAPTIPPMNTVLIAEDAAPGYSIGSISANDVDLRPDLSYTFTENGNPGLKF 2500

  Fly  1730 RVDSFRDTLSNITESIVNIDEIKVH----ENKDGSVDKTKTDLYMHLVEREDN------SIYEVS 1784
            .:|.:...:: :|||: :.:|...|    :..| ||..|:.:|.:.:::..||      :||:|:
 Frog  2501 AIDRYSGIIT-LTESL-DYEESSQHCLRIQASD-SVYHTEAELIIKVLDVNDNPPVFTQNIYKVA 2562

  Fly  1785  1784
             Frog  2563  2562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad88CNP_731930.3 Cadherin_repeat 76..168 CDD:206637 28/96 (29%)
Cadherin_repeat 179..276 CDD:206637 27/103 (26%)
Cadherin_repeat 287..388 CDD:206637 30/112 (27%)
Cadherin_repeat 397..506 CDD:206637 22/108 (20%)
Cadherin_repeat 514..617 CDD:206637 43/201 (21%)
Cadherin_repeat 625..742 CDD:206637 28/117 (24%)
Cadherin_repeat 751..853 CDD:206637 32/211 (15%)
Cadherin_repeat 865..976 CDD:206637 35/114 (31%)
Cadherin_repeat 985..1080 CDD:206637 28/97 (29%)
Cadherin_repeat 1090..1191 CDD:206637 27/100 (27%)
CA 1221..1302 CDD:214520 28/81 (35%)
Cadherin_repeat 1312..1409 CDD:206637 29/96 (30%)
Cadherin_repeat 1418..>1502 CDD:206637 14/87 (16%)
Cadherin_repeat 1617..1710 CDD:206637 25/111 (23%)
dchs2XP_012811431.2 Cadherin_repeat 42..137 CDD:206637
CA <347..387 CDD:214520
Cadherin_repeat 394..488 CDD:206637
Cadherin_repeat <600..661 CDD:206637 3/9 (33%)
Cadherin_repeat 672..769 CDD:206637 28/106 (26%)
Cadherin_repeat 778..877 CDD:206637 27/106 (25%)
Cadherin_repeat 885..977 CDD:206637 26/91 (29%)
Cadherin_repeat 991..1085 CDD:206637 25/126 (20%)
Cadherin_repeat 1095..1182 CDD:206637 21/86 (24%)
Cadherin_repeat 1198..1295 CDD:206637 19/96 (20%)
Cadherin_repeat 1305..1398 CDD:206637 28/115 (24%)
Cadherin_repeat 1412..1502 CDD:206637 25/97 (26%)
Cadherin_repeat 1517..1613 CDD:206637 7/95 (7%)
Cadherin_repeat 1626..1723 CDD:206637 34/112 (30%)
Cadherin_repeat 1732..1825 CDD:206637 27/96 (28%)
Cadherin_repeat 1836..1932 CDD:206637 27/101 (27%)
Cadherin_repeat 1942..2036 CDD:206637 32/102 (31%)
Cadherin_repeat 2044..2141 CDD:206637 31/101 (31%)
Cadherin_repeat 2149..2238 CDD:206637 18/118 (15%)
Cadherin_repeat 2251..2345 CDD:206637 17/94 (18%)
Cadherin_repeat 2354..2450 CDD:206637 25/106 (24%)
Cadherin_repeat 2459..2550 CDD:206637 18/93 (19%)
Cadherin_repeat 2558..2652 CDD:206637 3/5 (60%)
Cadherin_repeat 2662..2770 CDD:206637
Cadherin_repeat 2778..2875 CDD:206637
Cadherin_repeat 2888..2983 CDD:206637
Cadherin_repeat 2992..3087 CDD:206637
Blue background indicates that the domain is not in the aligned region.

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