DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad88C and dchs2

DIOPT Version :9

Sequence 1:NP_731930.3 Gene:Cad88C / 41774 FlyBaseID:FBgn0038247 Length:1981 Species:Drosophila melanogaster
Sequence 2:XP_012811431.2 Gene:dchs2 / 100485624 XenbaseID:XB-GENE-6048959 Length:3475 Species:Xenopus tropicalis


Alignment Length:2080 Identity:509/2080 - (24%)
Similarity:822/2080 - (39%) Gaps:510/2080 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 TTLISLVASN-RPPRF-AIDGQSEIVLRLKESPETKVGTLIYTLKGYDPD----NDPLTFGKRNS 105
            |.|:|:...| :||.| ..:|....:     |..|.:||.:..||..|.|    |..:|:..:.|
 Frog   651 TLLLSVTDLNDQPPMFLQPEGYQATI-----SEATSIGTAVLMLKAQDLDEDGPNSRVTYSLQES 710

  Fly   106 HDSEIIRIE-NTGGNEAKIFLAKELDRELQDEYAIVLTLTDSHYSDHNYVTQSFLLLVEDINDNV 169
            .:|....:| .||    .:.:|:.||.|......:|...|| |.|.....:.:..:.|||.|||.
 Frog   711 QNSSSFILEPGTG----VLSIAQLLDHESAPVLNLVAVATD-HGSPPLSSSCTITITVEDTNDND 770

  Fly   170 PTFLPYQNAIEIPEGSAPG-VVSTLEATDADEGAYGQVVYYLQELDG-----DNDVFSIATHQGK 228
            |.||.....:.:.|.:..| ....::|||||.|.:||:.|.:  .||     ::..|.|....|:
 Frog   771 PIFLQQFYNVSLQEHTVLGHCFLQVKATDADSGPFGQIHYSV--YDGFHNTKESQSFRIDPDSGR 833

  Fly   229 GILRLQKELDYER-KSLYQLRVLAIDRANQGPINTGTAAILVKVKDLEDQPPEFVEVQAVARIAE 292
              :.:..::|.|. .:.|.|.|.|.|   :|.: :..|.:.|.::|:.|..|.|.....|..|:.
 Frog   834 --ICVSNDIDKESGPTSYDLLVKAED---EGGL-SAQAFVRVDIEDINDNAPVFEPSTYVTSISS 892

  Fly   293 DAPVGTKVLRVRAIDGDRGINNPIAYSL---EANDLFDINPHTGIVHTLTKLDREEQS------- 347
            ....||::|.|.|||.|.|:...:.|.|   |.:.||.|:..|||::.::.|...|.|       
 Frog   893 HTQPGTEILNVMAIDRDEGLFGDVTYELLSGEHSSLFTIDSSTGIIYLISVLSHLEDSWVSLSVA 957

  Fly   348 DQVNGAHILRISAT-ELSKSNTQMAPTTV-RTEVTVIVSDVNDEIPTFGETVYRCEVNENAQTNT 410
            .:..|.....::|| .::...|..||... ::..|.:::   :::|. |..|...:..|      
 Frog   958 ARDKGGLTSAVNATVTMNILKTATAPAIFEKSRYTFVIA---EDVPK-GSAVGTVKARE------ 1012

  Fly   411 PLNFIDEEVQNVVFDHDEGNNGTFRLFLDPPNDLFEIVPELAVNEANFMLRVKNSKSLDFEQFTE 475
            |||.::..              ::|:.....:.:|.|..:..:        ::..|.||||....
 Frog  1013 PLNSLEPV--------------SYRIISGNVHQMFTIHTQFGI--------IRTQKELDFESLPL 1055

  Fly   476 VNFTIFAREVDEPSRWSSAHVQIFIRDQNDNFPEFSQTIYNASVLENSEQDTIITHVQAVDVDSG 540
            |..|: ..::...|.:||..|.:.|.|.|||.|.||......||.:|:...|.|...||.|:|||
 Frog  1056 VVLTV-QSQLGSSSVFSSTQVNVTITDANDNPPVFSSENERISVHQNTSPGTAIYIAQATDLDSG 1119

  Fly   541 DYG------------------TMGIRYTN--LRGGIAHLLNL------NPI-TGVITI------- 571
            ..|                  |.|:.|.|  |.....|:|.:      :|: :.::|:       
 Frog  1120 FNGQISYSIASENQDLFIIDSTFGVLYLNATLSSVREHVLLVLAEDYGHPVLSSLLTLTIIVEQN 1184

  Fly   572 KQAGGTAFDREI----------ISRHYLTVEA-------------------IDN----------- 596
            ||:...:|...:          |:.|.|.|:|                   ||:           
 Frog  1185 KQSNTLSFFNLVHRTEISETLPINSHILQVKAYTRNTQSTSSEIMYSLSPTIDSAPFRIHQSTGW 1249

  Fly   597 --------------------AGQGNRN-----TAQIIVDILDVNDNAPTFPQRQYETKLLENQAE 636
                                |..|:|.     ||.|||.|||.|||:|:|....:...:.|:...
 Frog  1250 IFLRRSVDYEKSKTHNLKVVATSGDREDQQTATASIIVKILDENDNSPSFDHATHFFTVNESPVP 1314

  Fly   637 FETPLQLEARDADLNGTENSQVTYEIV-EGLYRSNFTIDPQSGLLRPVHSFDFEELVDGSSRRSD 700
            ......::|.|.|  ...|.|::|.:: ||   :||.|..::|.:....|.|.|       |::.
 Frog  1315 HGVIGSIQAFDRD--SGNNGQLSYFLLSEG---NNFLISSKTGEIINCASLDHE-------RKAH 1367

  Fly   701 PYTGGSFSIREIDLLVRARDSGIPMLSTVVPVLIYVQDVNDNAPIFQQSFYAKTVPEDLPGGSS- 764
                     .|:::||  .|:|.|..:....|.|.|.|:|||.|.|.|....|.:...:..|.: 
 Frog  1368 ---------HELNVLV--TDNGTPRRNATTTVYIIVADLNDNKPYFPQLASGKQLHVKVMEGQAE 1421

  Fly   765 -VLQVTAIDRDGSAPNN--VVVYRIQTGAGDKFIINSETGVI--SVAHGANLDPDLTESKRSLYT 824
             :|..|...:|..|.||  ||.:.....:..:|:||:.||.|  :.|..|.|.|.        |.
 Frog  1422 PMLVATVYAKDPDAGNNGTVVYFFASDESFGQFVINASTGEIWTTKALSAKLRPQ--------YG 1478

  Fly   825 LSVIALDGG-------------------------------------------------------- 833
            |:|.|.|.|                                                        
 Frog  1479 LTVTASDQGTPPLVEHTVVNIEVISAFKEKTKTVSKIKTMKVPENTYPTQKIGSVISHEEAFLLS 1543

  Fly   834 ------LGNSQ-----LMTTCT-------------------------------------VNISIQ 850
                  |.|.:     ::.:.|                                     :.|.|:
 Frog  1544 SKMHYRLANEENKGHFVVDSLTGDVYVSRHLDFETISYYGLSIDIQEIDKISPPNLSVFLTIYIE 1608

  Fly   851 DVNNKPPVLKE-MPALQILENTPVGTLVYRIQATDLD---HKAILRYKLNPEHCEGRTEEGALVK 911
            |.|:..|:..: :..|.:.|:.|||||:|..:|.|.|   ..:.:||.|| .|..|.        
 Frog  1609 DTNDHRPLFPDHIIVLGVDEDVPVGTLLYTFKANDKDGSLENSKIRYSLN-THGTGE-------- 1664

  Fly   912 SSEYDFLGAFEVDSIEGTLKVVKLLDRERVEHIKLAITVEDLAA-AKGRQIAEGFLSIQVLDEND 975
                   ..|.:...||.|.....||||..|...|.:|..|.|| ...|:.....:.|.:.|.||
 Frog  1665 -------NPFFIHEWEGALTTANELDREMAESFVLTVTATDQAANISHRRCTSVIVRIVIQDIND 1722

  Fly   976 NNPK-FRLPFYRQSITENSINGAMIVNVLASDVDKNRT--ITYAL-EGNPTYRSLMHLDPQTGEI 1036
            |.|: ..||.  .|:.|::..|:::..::|.|.|:.|.  |.:.: |||.  :.:..||..||.:
 Frog  1723 NPPQVLSLPV--ASVMEDAQIGSLVHRIVAKDPDEGRNGKIGFHIKEGNA--QQVFLLDETTGWL 1783

  Fly  1037 VVASKIDHEQHQWLNFSVRATDSGIPARSSLVDVYITVLDENDNNPYFVGGSKNYTISENAAPGT 1101
            .:.|:||.|.......::.|.|.|||:.|....:.|:::|.|:..|.|..|.....:.||..||.
 Frog  1784 TLHSEIDREVQDHYILTILALDDGIPSLSVTQTLTISLIDVNNKTPTFTQGLYEAAVPENQDPGL 1848

  Fly  1102 RVATLQAGDADSGDFGKITFLMDRISSQGKFTIDADTGVLTVADRLDRESKDSYNLVIEAWDNYQ 1166
            .|..:.|.|.|.|:...:|:.:....:.|.|.|:.:||.|......|||.:|.:.:.:...|.  
 Frog  1849 YVIKVAAVDYDLGNNSVLTYEILPGPAYGHFRINPETGELVTTTVFDREQQDRFIIEVLVKDG-- 1911

  Fly  1167 FGFLAGESRNAFKQVFISILDENDNPPEVDLPMSCVLITEYHEL---HERVASIVGKDADDPTTP 1228
                .....::...:..|||||||:.|||..|...:.:.|..:|   |..:|:  .|||.:    
 Frog  1912 ----GSPPLSSTTAILCSILDENDHTPEVLFPDVEIRVPENQDLGIIHTVLAA--DKDAGN---- 1966

  Fly  1229 NGRLDFAITRGNKDGMFELRQIDAWNAQIFASKSL-RNRYGNYSLTITTRDMGLPANIVHNTLDI 1292
            ||||.|.||.||..|.|   .|:..:.|::|:::| |....::::|:...|:|.|.......|.|
 Frog  1967 NGRLHFQITDGNMGGYF---AINNTSGQLWATRTLDREDVSSFTITVECHDLGTPHRSTIAKLRI 2028

  Fly  1293 CVSDFNDHAPVFVRPLHNTTVRIPENATVGTLILQAYASDGDMGQNALVRYRLKPDPLGSYKMFE 1357
            .|.|.||:.|.|.:..:.|.||  |:..:|:.:|:..|||.|.|.|..:.|.|..|..|:   |.
 Frog  2029 TVLDENDNPPTFPKSQYRTLVR--EDLKIGSAVLKLQASDADEGLNKEIIYSLIDDTQGA---FT 2088

  Fly  1358 VDGSTGELFLKEQLNREKQKIHEIRIEAYDQGLPTSLSSDLDLTIYVRNVNDYEPQFMVNEISVN 1422
            |:.:||.:.....|:||.:..:..|:.|.|..|....|:.:.:.:|:.:|||..|.|..|.|.|.
 Frog  2089 VNRTTGNIVTIRTLDREVKHQYVFRVVASDCSLHNPKSATVKVLVYIEDVNDNSPVFTENPIHVL 2153

  Fly  1423 FTEHSDPGSERIKLPDTIDKDQLELDDPNDTP----SQVCYFIVNGNEAGYFRLDPETHILTVDR 1483
            .:            |..::...:.....:|..    ..|.|.::..|.  :|.:..|...:.:..
 Frog  2154 IS------------PKVLENKTIANVHASDVDLGLNGTVVYNLIKSNP--FFYITQEKGEVKLQM 2204

  Fly  1484 ELDREVIANFTLYVRATENCRNDSISGGEKRRRMGIEINNRLGGIVHNQQFGYDR---FKHSRQ- 1544
            .|..| .::..|.|:|::               :||..|...|.::.:.| |.|:   |.|:.. 
 Frog  2205 PLPAE-FSSTVLQVQASD---------------LGIPPNTVTGLVIIDIQ-GLDKEIAFVHNFYE 2252

  Fly  1545 ---LRSTESNE---------YGPEDAELLSYEAYDSSQE-----DP-TGGLATTHPEL------- 1584
               |.::|:..         :.|.| |::.|..:...::     :| ||.|....|.|       
 Frog  2253 AIILENSEAGTLVVTVKALYHNPND-EIIHYTVFSGDKKGAFNLNPITGDLMVKEPRLLDFETVN 2316

  Fly  1585 ------------DSTVIKVKVRVLDINDNPPRFRSKIFTGGITTNADFGLKFMRVEATDADEGDN 1637
                        .:|..:|.|.:.|.|||.|.|....:...::....|....::|.|.|.|.|.|
 Frog  2317 KFNLIISAESSQYTTYCRVTVFIQDDNDNAPVFDQLDYISFVSEGQPFNTFVIQVFAADGDSGIN 2381

  Fly  1638 GRIGYYQVGEIRQTLSEGLENVRKAPFLLDQETGEVQLNFDPQKGMKGYFDFVVLAND----TSG 1698
            |:|.|        ::..|.||   ..|:||...|.:..|....:.:|..:...|.|.|    :..
 Frog  2382 GQIDY--------SIISGNEN---NAFVLDSRHGILSTNVILDREIKSSYRLTVQATDRGSPSCS 2435

  Fly  1699 MKDVAHVFI---------------YLLREDQKVRFVF--------RLQPD-----------ELRS 1729
            ...|..|.|               .|:.||....:..        .|:||           .|:.
 Frog  2436 STSVVTVLILDINDNAPTIPPMNTVLIAEDAAPGYSIGSISANDVDLRPDLSYTFTENGNPGLKF 2500

  Fly  1730 RVDSFRDTLSNITESIVNIDEIKVH----ENKDGSVDKTKTDLYMHLVEREDN------SIYEVS 1784
            .:|.:...:: :|||: :.:|...|    :..| ||..|:.:|.:.:::..||      :||:|:
 Frog  2501 AIDRYSGIIT-LTESL-DYEESSQHCLRIQASD-SVYHTEAELIIKVLDVNDNPPVFTQNIYKVA 2562

  Fly  1785  1784
             Frog  2563  2562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad88CNP_731930.3 Cadherin_repeat 76..168 CDD:206637 28/96 (29%)
Cadherin_repeat 179..276 CDD:206637 27/103 (26%)
Cadherin_repeat 287..388 CDD:206637 30/112 (27%)
Cadherin_repeat 397..506 CDD:206637 22/108 (20%)
Cadherin_repeat 514..617 CDD:206637 43/201 (21%)
Cadherin_repeat 625..742 CDD:206637 28/117 (24%)
Cadherin_repeat 751..853 CDD:206637 32/211 (15%)
Cadherin_repeat 865..976 CDD:206637 35/114 (31%)
Cadherin_repeat 985..1080 CDD:206637 28/97 (29%)
Cadherin_repeat 1090..1191 CDD:206637 27/100 (27%)
CA 1221..1302 CDD:214520 28/81 (35%)
Cadherin_repeat 1312..1409 CDD:206637 29/96 (30%)
Cadherin_repeat 1418..>1502 CDD:206637 14/87 (16%)
Cadherin_repeat 1617..1710 CDD:206637 25/111 (23%)
dchs2XP_012811431.2 Cadherin_repeat 42..137 CDD:206637
CA <347..387 CDD:214520
Cadherin_repeat 394..488 CDD:206637
Cadherin_repeat <600..661 CDD:206637 3/9 (33%)
Cadherin_repeat 672..769 CDD:206637 28/106 (26%)
Cadherin_repeat 778..877 CDD:206637 27/106 (25%)
Cadherin_repeat 885..977 CDD:206637 26/91 (29%)
Cadherin_repeat 991..1085 CDD:206637 25/126 (20%)
Cadherin_repeat 1095..1182 CDD:206637 21/86 (24%)
Cadherin_repeat 1198..1295 CDD:206637 19/96 (20%)
Cadherin_repeat 1305..1398 CDD:206637 28/115 (24%)
Cadherin_repeat 1412..1502 CDD:206637 25/97 (26%)
Cadherin_repeat 1517..1613 CDD:206637 7/95 (7%)
Cadherin_repeat 1626..1723 CDD:206637 34/112 (30%)
Cadherin_repeat 1732..1825 CDD:206637 27/96 (28%)
Cadherin_repeat 1836..1932 CDD:206637 27/101 (27%)
Cadherin_repeat 1942..2036 CDD:206637 32/102 (31%)
Cadherin_repeat 2044..2141 CDD:206637 31/101 (31%)
Cadherin_repeat 2149..2238 CDD:206637 18/118 (15%)
Cadherin_repeat 2251..2345 CDD:206637 17/94 (18%)
Cadherin_repeat 2354..2450 CDD:206637 25/106 (24%)
Cadherin_repeat 2459..2550 CDD:206637 18/93 (19%)
Cadherin_repeat 2558..2652 CDD:206637 3/5 (60%)
Cadherin_repeat 2662..2770 CDD:206637
Cadherin_repeat 2778..2875 CDD:206637
Cadherin_repeat 2888..2983 CDD:206637
Cadherin_repeat 2992..3087 CDD:206637
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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