DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad88C and dchs1a

DIOPT Version :9

Sequence 1:NP_731930.3 Gene:Cad88C / 41774 FlyBaseID:FBgn0038247 Length:1981 Species:Drosophila melanogaster
Sequence 2:XP_002664697.2 Gene:dchs1a / 100334632 ZFINID:ZDB-GENE-120410-3 Length:3275 Species:Danio rerio


Alignment Length:2383 Identity:578/2383 - (24%)
Similarity:905/2383 - (37%) Gaps:681/2383 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 ISLVASNRPPRFAIDGQSEIVLRLKESPE-TKVGTLIYTLKGYDPDNDP---LTFGKRNSHDSEI 110
            :|.|..|.|.......:|.|:      || |::||::|.::..|.|:.|   |:|....|.....
Zfish   880 VSDVNDNAPVFLPSSSESLIL------PEDTRMGTVVYKVQAEDRDSGPNGLLSFDLFTSSAHRT 938

  Fly   111 IRIENTGGNEAKIFLAKELDRELQDEYAIVLTLTDSHYSDHNYVTQSFLLL--VEDINDNVPTFL 173
            ..|:...|:   :.|...|..|....|.:.:...||....   ::.:|.|:  |:..|...|.|.
Zfish   939 FSIDRNSGH---LRLIGSLSYETMPRYDLQVIAKDSGAPQ---LSSTFTLVIHVQAENGQGPVFD 997

  Fly   174 PYQNAIEIPEGSAP---------------GVVSTLEATDADEGAYGQVVYYLQELDGDNDVFSIA 223
            .....:|:.| |.|               |:.:.|.:|.|      .:.|:|.. |||...|.|.
Zfish   998 SLTYRVELKE-STPLNTRFLQVRAVNRDGGITTGLSSTSA------SLAYHLHP-DGDAAGFGIV 1054

  Fly   224 THQGKGILRLQKELDYERKSLYQLRVLAIDRANQGPI-NTGTAAILVKVKDLEDQPPEFVEVQAV 287
            :  ..|.|.::..||.|.|.:|.|.|||  .:..|.: .||:|.:.|.|.|..|..|.|.:.:|.
Zfish  1055 S--DSGWLFVKSALDREAKEMYLLTVLA--TSGNGQLKKTGSATVRVSVMDENDNTPRFTQERAF 1115

  Fly   288 ARIAEDAPVGTKVLRVRAIDGDRGINNPIAYSLEANDL-FDINPHTGIVHTLTKLDREEQSDQVN 351
            ..:.|:.|.||...||.|.|.|.|:|..::|.|...|. |.||.|||.:.|...||||.||    
Zfish  1116 LAVRENLPAGTGFGRVSASDRDAGLNGRLSYRLLHLDRHFQINSHTGEISTKLSLDRELQS---- 1176

  Fly   352 GAHILRISATELSKSNTQMAPTTVRTEVTVIVSDVNDEIPTFGETVYRCEVNENAQTNTPLNFID 416
             ::.|.:.|.:   ..|.....|....:||:  |.||..|:|          .||||...|....
Zfish  1177 -SYQLIVVAQD---GGTPPRSATGTAFITVL--DENDNAPSF----------SNAQTGRELLLQA 1225

  Fly   417 EEVQNVVF--------DHDEGNNGTF----------RLFLDP----------------PNDLFEI 447
            .|.|...|        |.|||.|||.          |..|:|                |...|.|
Zfish  1226 LEGQPSGFLLGTVHAKDPDEGENGTIFYSMSGPRAERFTLNPNTGELRSSSALSHSERPEYSFII 1290

  Fly   448 V-------PELAV-----------------NEANFMLR-------------VKNSKSLDFEQFTE 475
            :       |:.::                 |....:|:             |::..|....:..:
Zfish  1291 LASDRGSPPQSSIIALKIQVLSSSKGSPNTNSQPLILKSVEGAKPGSMIGSVRSPDSQALPESGQ 1355

  Fly   476 VNFTI--------------------FAREVDE---PSRWSSAHVQIF---------------IRD 502
            |.||:                    .|||:|.   |.......|..|               ::|
Zfish  1356 VTFTVVGGTDFDGTFVVDRQTGDIYLARELDFEKCPRYTLQVEVDDFSMPLPKSDIITLIIDVQD 1420

  Fly   503 QNDNFPEFSQTIYNASVLENSEQDTIITHVQAVDVDSGDYGTMGIRYTNLR--GGIAHLLNLNPI 565
            .||:.|||.:......|.||::..:.....||||.| |......:.|:.|:  ..|..||:|:|.
Zfish  1421 SNDHSPEFPEDPIIIVVPENTDPGSSFYTFQAVDKD-GSGPNSEVHYSILQQWPNIPDLLSLDPT 1484

  Fly   566 TGVITIKQAGGTAFDREIISRHYLTVEAIDNA---GQGNRNTAQIIVDILDVNDNAPTFPQRQYE 627
            ||.:::    |...|.|..|...|.|:|.|:|   .|..|.:....:.:.|||||.|.|..... 
Zfish  1485 TGALSL----GMMLDHEKTSSLLLVVQASDSALDVSQRRRGSVTARIFVTDVNDNEPVFISASV- 1544

  Fly   628 TKLLENQAEFETPLQLEARDADLNGTENSQVTYEIVEGLYRSNFTIDPQSG---LLRPVHSFDFE 689
            ..::|:|......:.:.|.|||..  ||.:|||.|..|..|..|:|:|.:|   :|||:   |.|
Zfish  1545 VSVMEDQPVGFVVVYVMAVDADQG--ENGRVTYRIQSGNVRGKFSINPDTGSLSILRPI---DRE 1604

  Fly   690 ELVDGSSRRSDPYTGGSFSIREIDLLVRARDSGIPMLSTVVPVLIYVQDVNDNAPIFQQSFYAKT 754
            |        .|.|          :|.:.|.|.|:...|:...:.:.|.||||.||.||:|.|...
Zfish  1605 E--------EDLY----------NLTIVAEDHGLQQRSSSQLLSVQVIDVNDEAPYFQESQYEAF 1651

  Fly   755 VPEDLPGGSSVLQVTAIDRDGSAPNNVVVYRIQTGA--GDKFIINSETGVISVAHGANLDPDLTE 817
            :.|:.|.||:||.|:|.|.| ...|.:|.|    |:  ||.|.|:..||||:....      |..
Zfish  1652 IAENQPAGSTVLVVSASDMD-QGTNGIVTY----GSIVGDDFSIHPVTGVITTTKA------LDR 1705

  Fly   818 SKRSLYTLSVIALDGGLGNSQLMTTCTVNISIQDVN-NKPPVLKEMPALQILENTPVGTLVYRIQ 881
            ..:.:|.|:|.|.|||...:...|  ||.:::.|.| |:|...:...:|::.||....|| :.|:
Zfish  1706 EAQGVYALTVYARDGGSPPNFAKT--TVRVTVLDENDNRPAFGRVYYSLEVPENQEPVTL-FTIR 1767

  Fly   882 ATDLD--HKAILRYKLNPEHCEGRTEEGALVKSSEYDFLGAFEVDSIEGTLKVVKLLDRERVEHI 944
            |||.|  ...::.|::                 ::.|..|.|.:|...|.|...:.||||  ...
Zfish  1768 ATDQDSGDSGLVYYRI-----------------TDGDHFGDFHLDKKLGVLSTSRALDRE--SRA 1813

  Fly   945 KLAITVEDLAAAKGRQIAEGFLSIQVLDENDNNPKFRLPFYRQSITENSINGAMIVNVLASDVDK 1009
            |..:|||..........:...|.|.|||.|||:|.|....|...::|::..|::::.|.|||.|:
Zfish  1814 KYTLTVEAQDQGIPSLTSTVTLDISVLDLNDNSPVFPSSSYSVEVSEDASAGSLVLEVSASDKDE 1878

  Fly  1010 --NRTITYALEGNPTYRSLMHLDPQTGEIVVASKIDHEQHQWLNFSVRATDSGIP-ARSSLVDVY 1071
              |..:.|.|....:  .:..:|..||.|:.|:.:|.|:....||.|.|.||... .|:|..:|.
Zfish  1879 GSNSQVVYFLSRESS--GMFIVDQHTGRIITAATLDREKVASYNFQVYAMDSSATNPRNSSAEVA 1941

  Fly  1072 ITVLDENDNNPYFVGGSKNYTISENAAPGTRV-ATLQAGDADSGDFGKITFLMDRISSQGK-FTI 1134
            :.:||.|||.|:|:.......:|.::....|| ||::|.|.|.|..|.:.:   |.::..| |||
Zfish  1942 VHILDVNDNAPFFITDPLIINVSISSLSNHRVLATMRAEDKDFGANGSVFY---RFANPVKGFTI 2003

  Fly  1135 DADTGVLTVADRLDRESKDSYNLVIEAWD-------------------NYQ-------------- 1166
            ::.||.:...::|...::....|::||.|                   :||              
Zfish  2004 NSLTGAIQATEKLQALTQSQRILIVEAMDQGNPSQSSLGVVIVYIREQSYQGVRFSRNTRDVSLQ 2068

  Fly  1167 -------------------------FGFLAGE--------------------------------- 1173
                                     :...:|.                                 
Zfish  2069 ENAAKGTAVVQIHAQYPDGSTSGINYSIFSGNKQQSFSISHHTGEIWVEDSTGLDFEETPRLRLV 2133

  Fly  1174 ------SRNAFKQVFISILDENDNPPEVDLPMSCVLITEYHELHERVASIVGKDADDPTTPNGRL 1232
                  |.::|..|.:.:.|.|||.|...|......:.|.......:..::..|.|.  ..||::
Zfish  2134 VKAETASSSSFMAVNLLLQDVNDNLPRFQLHNYVAYVREAQGYDHPIIQVLANDLDQ--GQNGQV 2196

  Fly  1233 DFAITRGNKDGMFELRQI------------DAW---NAQIFAS---------------------- 1260
            .::|...:..|:|::..|            :.|   |..|.|:                      
Zfish  2197 TYSIRSSSMSGLFKIDPITGSISTAAIMDREIWTQTNLVIMATDRGSPRLAGSATLTVIIVDLND 2261

  Fly  1261 --------KSLR-----------------------------------------NRYGN------- 1269
                    :.:|                                         :|||.       
Zfish  2262 NSPTIPVPREVRVPENTLIGTMITQVTGNDVDSGPALSYTLLLDSDTQGKFGIHRYGGGVSLTTP 2326

  Fly  1270 --------YSLTITTRDMGLPANIVHNTLDICVSDFNDHAPVFVRPLHNTTVRIPENATVGTLIL 1326
                    |:||:::.|....:   |..|.|.|.|.||:||||.:.|:..|  :.|::..|:.::
Zfish  2327 LDFEIKTWYTLTVSSSDSKQQS---HANLTILVEDVNDNAPVFSQDLYEVT--LAEHSPAGSSVI 2386

  Fly  1327 QAYASDGDMGQNALVRYRLKPDPLGSYKMFEVDGSTGELFLKEQLNREKQKIH-EIRIEAYDQGL 1390
            ...|:|.|.|:|..:.||:    :.:..||.:|.|.|.||:|:::..:.|:.. .:.|||.|.|.
Zfish  2387 TVTATDKDSGENGRITYRV----VSTKDMFYIDPSNGTLFIKKEVEFDSQRPSILVVIEASDSGT 2447

  Fly  1391 P--TSLSSDLDLTIYVRNVNDYEPQFMVNEISVNFTEHSDPGSERIKLPDTIDKDQLELDDPNDT 1453
            |  |:||:   :.::|.:|||..|.|...|...:.:|...|||..:.| :..|.| |..|:    
Zfish  2448 PPLTALST---VQVHVSDVNDNAPVFHQTEYRASVSEDEVPGSTILTL-EAADGD-LSRDN---- 2503

  Fly  1454 PSQVCYF---IVNGNEAGYFRLDP-----ETH------ILTVDRELDREVIANFTLYVRATENCR 1504
                |.|   |.:||....|:::.     |.|      :|.:..:||.|:.:::.|.:..::.  
Zfish  2504 ----CGFDFAIASGNIGNTFQIESSVRFLEGHGFQTVGMLILADKLDFEIASSYNLTIVVSDR-- 2562

  Fly  1505 NDSISGGEKRRRMGIEINNRLGGIVHNQQFGYDRFKHSRQLRSTESNEYGPEDAELLSYEAYD-- 1567
                  |..:|...:.:      :::......:....||...|...||......|:|...|.|  
Zfish  2563 ------GIPQRSSSVPV------LINVMDTNDNPPSFSRAEYSAVVNEGAERGTEILQLFAIDPD 2615

  Fly  1568 -----------SSQEDP--------TGGLATTHPELDS-------------------TVIKVKVR 1594
                       ||.:|.        ||.:.... .|||                   .:..|.|.
Zfish  2616 STPNGEVQYSISSGDDSELFTVDQWTGAVRLRR-SLDSEKQSSHMFVIQASDGQGHFALAPVTVE 2679

  Fly  1595 VLDINDNPPRFRSKIFTGGITTNADFGLKFMRVEATDADEGDNGRIGYYQVGEIRQTLSEGLENV 1659
            :.|||:|.|.|..|..|..|..|.........:.|.|.|:|        ..||:|..|:....| 
Zfish  2680 IKDINNNRPYFPLKSLTASIRENQPQNALVTILHAIDHDKG--------AYGELRYFLTYNAGN- 2735

  Fly  1660 RKAPFLLDQETGEVQLNFDPQKGMKGYFDFVVLANDTSGMKDVAHVFIYLLREDQ------KVRF 1718
            .|..||::|.:|||:..|.........|:|:.:|.||........|.:::..||:      :..|
Zfish  2736 GKDSFLVNQTSGEVRTRFTFDYEKTNTFNFIAIAMDTGNYTATVTVQVFVTGEDEYDPVFTESDF 2800

  Fly  1719 VFRLQPDELRSRVDSFRDTLSNITESIVNIDEIKVHENKDGSVD--------------------- 1762
            .|.:.....:.:                :|.::..:: :||.||                     
Zfish  2801 AFHVPEGAKKGQ----------------SIGQVNAND-EDGGVDGIVLYTLANSSPYFELNTSTG 2848

  Fly  1763 --KTKTDLYMHLVEREDNSIYEVSEVLKLI-DSHIESLN---------------GLFKELNVLDT 1809
              ..|.|.|...|.|......:::  |.:| .|.:|:..               ||..::||:..
Zfish  2849 VISLKMDAYHRHVTRSKRETRQMT--LDVIAHSPLENSRKTSAQITVDVTHTSFGLTTDMNVVLA 2911

  Fly  1810 QAAEAQLLTAGPSRGPLFVWLIFTNLFLATLLVVTIALCASQRNGYRRQLRAAKVNIFRGHSSMS 1874
            .|..|.|..        .|:||        ::||.|.|..|||  |:.|....:: :..|....|
Zfish  2912 SAITASLAA--------IVFLI--------IVVVVIFLLRSQR--YKEQETCTRI-VTHGTVLES 2957

  Fly  1875 LQDAQEPATRVPNTNK--HSVQGSNPIWLKGYDNEWFKSEESGSIGG----HDSLDDNFLAVATQ 1933
            |:|     ::||..:|  |..       |.||     .:::||::||    ..|||.:       
Zfish  2958 LED-----SKVPGGDKLYHQT-------LPGY-----AADQSGNVGGAYTRGGSLDPS------- 2998

  Fly  1934 DMHETLKGTAKLFNNSNDLNRHFNLYNQIDKMTNNAQ--ILAR 1974
              |.:.:|:|:.....:|..|..|.|.|:..::::.|  |.||
Zfish  2999 --HSSGRGSAEAEAAEDDEIRMINEYPQVASISSSMQEHIAAR 3039

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad88CNP_731930.3 Cadherin_repeat 76..168 CDD:206637 24/97 (25%)
Cadherin_repeat 179..276 CDD:206637 33/112 (29%)
Cadherin_repeat 287..388 CDD:206637 34/101 (34%)
Cadherin_repeat 397..506 CDD:206637 38/217 (18%)
Cadherin_repeat 514..617 CDD:206637 32/107 (30%)
Cadherin_repeat 625..742 CDD:206637 35/119 (29%)
Cadherin_repeat 751..853 CDD:206637 35/103 (34%)
Cadherin_repeat 865..976 CDD:206637 31/112 (28%)
Cadherin_repeat 985..1080 CDD:206637 30/97 (31%)
Cadherin_repeat 1090..1191 CDD:206637 30/199 (15%)
CA 1221..1302 CDD:214520 27/181 (15%)
Cadherin_repeat 1312..1409 CDD:206637 30/99 (30%)
Cadherin_repeat 1418..>1502 CDD:206637 23/97 (24%)
Cadherin_repeat 1617..1710 CDD:206637 24/92 (26%)
dchs1aXP_002664697.2 Cadherin_repeat 45..135 CDD:206637
Cadherin_repeat 145..247 CDD:206637
Cadherin_repeat 256..354 CDD:206637
Cadherin_repeat 370..464 CDD:206637
Cadherin_repeat 472..571 CDD:206637
Cadherin_repeat 580..678 CDD:206637
Cadherin_repeat 686..778 CDD:206637
Cadherin_repeat 791..886 CDD:206637 2/5 (40%)
Cadherin_repeat 900..990 CDD:206637 23/101 (23%)
Cadherin_repeat 1000..1105 CDD:206637 33/116 (28%)
Cadherin_repeat 1118..1208 CDD:206637 35/99 (35%)
Cadherin_repeat 1227..1311 CDD:206637 17/83 (20%)
Cadherin_repeat 1331..1424 CDD:206637 14/92 (15%)
Cadherin_repeat 1432..1535 CDD:206637 32/107 (30%)
Cadherin_repeat 1544..1638 CDD:206637 34/117 (29%)
Cadherin_repeat 1647..1741 CDD:206637 36/106 (34%)
Cadherin_repeat 1750..1845 CDD:206637 31/114 (27%)
Cadherin_repeat 1861..1950 CDD:206637 28/90 (31%)
Cadherin_repeat 1958..2048 CDD:206637 22/92 (24%)
Cadherin_repeat 2065..2157 CDD:206637 6/91 (7%)
Cadherin_repeat 2166..2262 CDD:206637 13/97 (13%)
Cadherin_repeat 2269..2362 CDD:206637 14/95 (15%)
Cadherin_repeat 2371..2466 CDD:206637 31/103 (30%)
Cadherin_repeat 2474..2583 CDD:206637 25/132 (19%)
Cadherin_repeat 2591..2686 CDD:206637 20/95 (21%)
Cadherin_repeat 2694..2790 CDD:206637 27/104 (26%)
Cadherin_repeat 2802..2896 CDD:206637 15/112 (13%)
Cadherin_C <3109..3156 CDD:279398
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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