DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad88C and dchs1a

DIOPT Version :10

Sequence 1:NP_731930.3 Gene:Cad88C / 41774 FlyBaseID:FBgn0038247 Length:1981 Species:Drosophila melanogaster
Sequence 2:XP_002664697.2 Gene:dchs1a / 100334632 ZFINID:ZDB-GENE-120410-3 Length:3275 Species:Danio rerio


Alignment Length:2383 Identity:578/2383 - (24%)
Similarity:905/2383 - (37%) Gaps:681/2383 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 ISLVASNRPPRFAIDGQSEIVLRLKESPE-TKVGTLIYTLKGYDPDNDP---LTFGKRNSHDSEI 110
            :|.|..|.|.......:|.|:      || |::||::|.::..|.|:.|   |:|....|.....
Zfish   880 VSDVNDNAPVFLPSSSESLIL------PEDTRMGTVVYKVQAEDRDSGPNGLLSFDLFTSSAHRT 938

  Fly   111 IRIENTGGNEAKIFLAKELDRELQDEYAIVLTLTDSHYSDHNYVTQSFLLL--VEDINDNVPTFL 173
            ..|:...|:   :.|...|..|....|.:.:...||....   ::.:|.|:  |:..|...|.|.
Zfish   939 FSIDRNSGH---LRLIGSLSYETMPRYDLQVIAKDSGAPQ---LSSTFTLVIHVQAENGQGPVFD 997

  Fly   174 PYQNAIEIPEGSAP---------------GVVSTLEATDADEGAYGQVVYYLQELDGDNDVFSIA 223
            .....:|:.| |.|               |:.:.|.:|.|      .:.|:|.. |||...|.|.
Zfish   998 SLTYRVELKE-STPLNTRFLQVRAVNRDGGITTGLSSTSA------SLAYHLHP-DGDAAGFGIV 1054

  Fly   224 THQGKGILRLQKELDYERKSLYQLRVLAIDRANQGPI-NTGTAAILVKVKDLEDQPPEFVEVQAV 287
            :  ..|.|.::..||.|.|.:|.|.|||  .:..|.: .||:|.:.|.|.|..|..|.|.:.:|.
Zfish  1055 S--DSGWLFVKSALDREAKEMYLLTVLA--TSGNGQLKKTGSATVRVSVMDENDNTPRFTQERAF 1115

  Fly   288 ARIAEDAPVGTKVLRVRAIDGDRGINNPIAYSLEANDL-FDINPHTGIVHTLTKLDREEQSDQVN 351
            ..:.|:.|.||...||.|.|.|.|:|..::|.|...|. |.||.|||.:.|...||||.||    
Zfish  1116 LAVRENLPAGTGFGRVSASDRDAGLNGRLSYRLLHLDRHFQINSHTGEISTKLSLDRELQS---- 1176

  Fly   352 GAHILRISATELSKSNTQMAPTTVRTEVTVIVSDVNDEIPTFGETVYRCEVNENAQTNTPLNFID 416
             ::.|.:.|.:   ..|.....|....:||:  |.||..|:|          .||||...|....
Zfish  1177 -SYQLIVVAQD---GGTPPRSATGTAFITVL--DENDNAPSF----------SNAQTGRELLLQA 1225

  Fly   417 EEVQNVVF--------DHDEGNNGTF----------RLFLDP----------------PNDLFEI 447
            .|.|...|        |.|||.|||.          |..|:|                |...|.|
Zfish  1226 LEGQPSGFLLGTVHAKDPDEGENGTIFYSMSGPRAERFTLNPNTGELRSSSALSHSERPEYSFII 1290

  Fly   448 V-------PELAV-----------------NEANFMLR-------------VKNSKSLDFEQFTE 475
            :       |:.::                 |....:|:             |::..|....:..:
Zfish  1291 LASDRGSPPQSSIIALKIQVLSSSKGSPNTNSQPLILKSVEGAKPGSMIGSVRSPDSQALPESGQ 1355

  Fly   476 VNFTI--------------------FAREVDE---PSRWSSAHVQIF---------------IRD 502
            |.||:                    .|||:|.   |.......|..|               ::|
Zfish  1356 VTFTVVGGTDFDGTFVVDRQTGDIYLARELDFEKCPRYTLQVEVDDFSMPLPKSDIITLIIDVQD 1420

  Fly   503 QNDNFPEFSQTIYNASVLENSEQDTIITHVQAVDVDSGDYGTMGIRYTNLR--GGIAHLLNLNPI 565
            .||:.|||.:......|.||::..:.....||||.| |......:.|:.|:  ..|..||:|:|.
Zfish  1421 SNDHSPEFPEDPIIIVVPENTDPGSSFYTFQAVDKD-GSGPNSEVHYSILQQWPNIPDLLSLDPT 1484

  Fly   566 TGVITIKQAGGTAFDREIISRHYLTVEAIDNA---GQGNRNTAQIIVDILDVNDNAPTFPQRQYE 627
            ||.:::    |...|.|..|...|.|:|.|:|   .|..|.:....:.:.|||||.|.|..... 
Zfish  1485 TGALSL----GMMLDHEKTSSLLLVVQASDSALDVSQRRRGSVTARIFVTDVNDNEPVFISASV- 1544

  Fly   628 TKLLENQAEFETPLQLEARDADLNGTENSQVTYEIVEGLYRSNFTIDPQSG---LLRPVHSFDFE 689
            ..::|:|......:.:.|.|||..  ||.:|||.|..|..|..|:|:|.:|   :|||:   |.|
Zfish  1545 VSVMEDQPVGFVVVYVMAVDADQG--ENGRVTYRIQSGNVRGKFSINPDTGSLSILRPI---DRE 1604

  Fly   690 ELVDGSSRRSDPYTGGSFSIREIDLLVRARDSGIPMLSTVVPVLIYVQDVNDNAPIFQQSFYAKT 754
            |        .|.|          :|.:.|.|.|:...|:...:.:.|.||||.||.||:|.|...
Zfish  1605 E--------EDLY----------NLTIVAEDHGLQQRSSSQLLSVQVIDVNDEAPYFQESQYEAF 1651

  Fly   755 VPEDLPGGSSVLQVTAIDRDGSAPNNVVVYRIQTGA--GDKFIINSETGVISVAHGANLDPDLTE 817
            :.|:.|.||:||.|:|.|.| ...|.:|.|    |:  ||.|.|:..||||:....      |..
Zfish  1652 IAENQPAGSTVLVVSASDMD-QGTNGIVTY----GSIVGDDFSIHPVTGVITTTKA------LDR 1705

  Fly   818 SKRSLYTLSVIALDGGLGNSQLMTTCTVNISIQDVN-NKPPVLKEMPALQILENTPVGTLVYRIQ 881
            ..:.:|.|:|.|.|||...:...|  ||.:::.|.| |:|...:...:|::.||....|| :.|:
Zfish  1706 EAQGVYALTVYARDGGSPPNFAKT--TVRVTVLDENDNRPAFGRVYYSLEVPENQEPVTL-FTIR 1767

  Fly   882 ATDLD--HKAILRYKLNPEHCEGRTEEGALVKSSEYDFLGAFEVDSIEGTLKVVKLLDRERVEHI 944
            |||.|  ...::.|::                 ::.|..|.|.:|...|.|...:.||||  ...
Zfish  1768 ATDQDSGDSGLVYYRI-----------------TDGDHFGDFHLDKKLGVLSTSRALDRE--SRA 1813

  Fly   945 KLAITVEDLAAAKGRQIAEGFLSIQVLDENDNNPKFRLPFYRQSITENSINGAMIVNVLASDVDK 1009
            |..:|||..........:...|.|.|||.|||:|.|....|...::|::..|::::.|.|||.|:
Zfish  1814 KYTLTVEAQDQGIPSLTSTVTLDISVLDLNDNSPVFPSSSYSVEVSEDASAGSLVLEVSASDKDE 1878

  Fly  1010 --NRTITYALEGNPTYRSLMHLDPQTGEIVVASKIDHEQHQWLNFSVRATDSGIP-ARSSLVDVY 1071
              |..:.|.|....:  .:..:|..||.|:.|:.:|.|:....||.|.|.||... .|:|..:|.
Zfish  1879 GSNSQVVYFLSRESS--GMFIVDQHTGRIITAATLDREKVASYNFQVYAMDSSATNPRNSSAEVA 1941

  Fly  1072 ITVLDENDNNPYFVGGSKNYTISENAAPGTRV-ATLQAGDADSGDFGKITFLMDRISSQGK-FTI 1134
            :.:||.|||.|:|:.......:|.::....|| ||::|.|.|.|..|.:.:   |.::..| |||
Zfish  1942 VHILDVNDNAPFFITDPLIINVSISSLSNHRVLATMRAEDKDFGANGSVFY---RFANPVKGFTI 2003

  Fly  1135 DADTGVLTVADRLDRESKDSYNLVIEAWD-------------------NYQ-------------- 1166
            ::.||.:...::|...::....|::||.|                   :||              
Zfish  2004 NSLTGAIQATEKLQALTQSQRILIVEAMDQGNPSQSSLGVVIVYIREQSYQGVRFSRNTRDVSLQ 2068

  Fly  1167 -------------------------FGFLAGE--------------------------------- 1173
                                     :...:|.                                 
Zfish  2069 ENAAKGTAVVQIHAQYPDGSTSGINYSIFSGNKQQSFSISHHTGEIWVEDSTGLDFEETPRLRLV 2133

  Fly  1174 ------SRNAFKQVFISILDENDNPPEVDLPMSCVLITEYHELHERVASIVGKDADDPTTPNGRL 1232
                  |.::|..|.:.:.|.|||.|...|......:.|.......:..::..|.|.  ..||::
Zfish  2134 VKAETASSSSFMAVNLLLQDVNDNLPRFQLHNYVAYVREAQGYDHPIIQVLANDLDQ--GQNGQV 2196

  Fly  1233 DFAITRGNKDGMFELRQI------------DAW---NAQIFAS---------------------- 1260
            .::|...:..|:|::..|            :.|   |..|.|:                      
Zfish  2197 TYSIRSSSMSGLFKIDPITGSISTAAIMDREIWTQTNLVIMATDRGSPRLAGSATLTVIIVDLND 2261

  Fly  1261 --------KSLR-----------------------------------------NRYGN------- 1269
                    :.:|                                         :|||.       
Zfish  2262 NSPTIPVPREVRVPENTLIGTMITQVTGNDVDSGPALSYTLLLDSDTQGKFGIHRYGGGVSLTTP 2326

  Fly  1270 --------YSLTITTRDMGLPANIVHNTLDICVSDFNDHAPVFVRPLHNTTVRIPENATVGTLIL 1326
                    |:||:::.|....:   |..|.|.|.|.||:||||.:.|:..|  :.|::..|:.::
Zfish  2327 LDFEIKTWYTLTVSSSDSKQQS---HANLTILVEDVNDNAPVFSQDLYEVT--LAEHSPAGSSVI 2386

  Fly  1327 QAYASDGDMGQNALVRYRLKPDPLGSYKMFEVDGSTGELFLKEQLNREKQKIH-EIRIEAYDQGL 1390
            ...|:|.|.|:|..:.||:    :.:..||.:|.|.|.||:|:::..:.|:.. .:.|||.|.|.
Zfish  2387 TVTATDKDSGENGRITYRV----VSTKDMFYIDPSNGTLFIKKEVEFDSQRPSILVVIEASDSGT 2447

  Fly  1391 P--TSLSSDLDLTIYVRNVNDYEPQFMVNEISVNFTEHSDPGSERIKLPDTIDKDQLELDDPNDT 1453
            |  |:||:   :.::|.:|||..|.|...|...:.:|...|||..:.| :..|.| |..|:    
Zfish  2448 PPLTALST---VQVHVSDVNDNAPVFHQTEYRASVSEDEVPGSTILTL-EAADGD-LSRDN---- 2503

  Fly  1454 PSQVCYF---IVNGNEAGYFRLDP-----ETH------ILTVDRELDREVIANFTLYVRATENCR 1504
                |.|   |.:||....|:::.     |.|      :|.:..:||.|:.:::.|.:..::.  
Zfish  2504 ----CGFDFAIASGNIGNTFQIESSVRFLEGHGFQTVGMLILADKLDFEIASSYNLTIVVSDR-- 2562

  Fly  1505 NDSISGGEKRRRMGIEINNRLGGIVHNQQFGYDRFKHSRQLRSTESNEYGPEDAELLSYEAYD-- 1567
                  |..:|...:.:      :::......:....||...|...||......|:|...|.|  
Zfish  2563 ------GIPQRSSSVPV------LINVMDTNDNPPSFSRAEYSAVVNEGAERGTEILQLFAIDPD 2615

  Fly  1568 -----------SSQEDP--------TGGLATTHPELDS-------------------TVIKVKVR 1594
                       ||.:|.        ||.:.... .|||                   .:..|.|.
Zfish  2616 STPNGEVQYSISSGDDSELFTVDQWTGAVRLRR-SLDSEKQSSHMFVIQASDGQGHFALAPVTVE 2679

  Fly  1595 VLDINDNPPRFRSKIFTGGITTNADFGLKFMRVEATDADEGDNGRIGYYQVGEIRQTLSEGLENV 1659
            :.|||:|.|.|..|..|..|..|.........:.|.|.|:|        ..||:|..|:....| 
Zfish  2680 IKDINNNRPYFPLKSLTASIRENQPQNALVTILHAIDHDKG--------AYGELRYFLTYNAGN- 2735

  Fly  1660 RKAPFLLDQETGEVQLNFDPQKGMKGYFDFVVLANDTSGMKDVAHVFIYLLREDQ------KVRF 1718
            .|..||::|.:|||:..|.........|:|:.:|.||........|.:::..||:      :..|
Zfish  2736 GKDSFLVNQTSGEVRTRFTFDYEKTNTFNFIAIAMDTGNYTATVTVQVFVTGEDEYDPVFTESDF 2800

  Fly  1719 VFRLQPDELRSRVDSFRDTLSNITESIVNIDEIKVHENKDGSVD--------------------- 1762
            .|.:.....:.:                :|.::..:: :||.||                     
Zfish  2801 AFHVPEGAKKGQ----------------SIGQVNAND-EDGGVDGIVLYTLANSSPYFELNTSTG 2848

  Fly  1763 --KTKTDLYMHLVEREDNSIYEVSEVLKLI-DSHIESLN---------------GLFKELNVLDT 1809
              ..|.|.|...|.|......:::  |.:| .|.:|:..               ||..::||:..
Zfish  2849 VISLKMDAYHRHVTRSKRETRQMT--LDVIAHSPLENSRKTSAQITVDVTHTSFGLTTDMNVVLA 2911

  Fly  1810 QAAEAQLLTAGPSRGPLFVWLIFTNLFLATLLVVTIALCASQRNGYRRQLRAAKVNIFRGHSSMS 1874
            .|..|.|..        .|:||        ::||.|.|..|||  |:.|....:: :..|....|
Zfish  2912 SAITASLAA--------IVFLI--------IVVVVIFLLRSQR--YKEQETCTRI-VTHGTVLES 2957

  Fly  1875 LQDAQEPATRVPNTNK--HSVQGSNPIWLKGYDNEWFKSEESGSIGG----HDSLDDNFLAVATQ 1933
            |:|     ::||..:|  |..       |.||     .:::||::||    ..|||.:       
Zfish  2958 LED-----SKVPGGDKLYHQT-------LPGY-----AADQSGNVGGAYTRGGSLDPS------- 2998

  Fly  1934 DMHETLKGTAKLFNNSNDLNRHFNLYNQIDKMTNNAQ--ILAR 1974
              |.:.:|:|:.....:|..|..|.|.|:..::::.|  |.||
Zfish  2999 --HSSGRGSAEAEAAEDDEIRMINEYPQVASISSSMQEHIAAR 3039

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad88CNP_731930.3 Cadherin_repeat 76..168 CDD:206637 24/97 (25%)
Cadherin_repeat 179..276 CDD:206637 33/112 (29%)
Cadherin_repeat 287..388 CDD:206637 34/101 (34%)
Cadherin_repeat 397..506 CDD:206637 38/217 (18%)
Cadherin_repeat 514..617 CDD:206637 32/107 (30%)
Cadherin_repeat 625..742 CDD:206637 35/119 (29%)
Cadherin_repeat 751..853 CDD:206637 35/103 (34%)
Cadherin_repeat 865..976 CDD:206637 31/112 (28%)
Cadherin_repeat 985..1080 CDD:206637 30/97 (31%)
Cadherin_repeat 1090..1191 CDD:206637 30/199 (15%)
CA 1221..1302 CDD:214520 27/181 (15%)
Cadherin_repeat 1312..1409 CDD:206637 30/99 (30%)
Cadherin_repeat 1418..>1502 CDD:206637 23/97 (24%)
Cadherin_repeat 1617..1710 CDD:206637 24/92 (26%)
dchs1aXP_002664697.2 Cadherin_repeat 45..135 CDD:206637
Cadherin_repeat 145..247 CDD:206637
Cadherin_repeat 256..354 CDD:206637
Cadherin_repeat 370..464 CDD:206637
Cadherin_repeat 472..571 CDD:206637
Cadherin_repeat 580..678 CDD:206637
Cadherin_repeat 686..778 CDD:206637
Cadherin_repeat 791..886 CDD:206637 2/5 (40%)
Cadherin_repeat 900..990 CDD:206637 23/101 (23%)
Cadherin_repeat 1000..1105 CDD:206637 33/116 (28%)
Cadherin_repeat 1118..1208 CDD:206637 35/99 (35%)
Cadherin_repeat 1227..1311 CDD:206637 17/83 (20%)
Cadherin_repeat 1331..1424 CDD:206637 14/92 (15%)
Cadherin_repeat 1432..1535 CDD:206637 32/107 (30%)
Cadherin_repeat 1544..1638 CDD:206637 34/117 (29%)
Cadherin_repeat 1647..1741 CDD:206637 36/106 (34%)
Cadherin_repeat 1750..1845 CDD:206637 31/114 (27%)
Cadherin_repeat 1861..1950 CDD:206637 28/90 (31%)
Cadherin_repeat 1958..2048 CDD:206637 22/92 (24%)
Cadherin_repeat 2065..2157 CDD:206637 6/91 (7%)
Cadherin_repeat 2166..2262 CDD:206637 13/97 (13%)
Cadherin_repeat 2269..2362 CDD:206637 14/95 (15%)
Cadherin_repeat 2371..2466 CDD:206637 31/103 (30%)
Cadherin_repeat 2474..2583 CDD:206637 25/132 (19%)
Cadherin_repeat 2591..2686 CDD:206637 20/95 (21%)
Cadherin_repeat 2694..2790 CDD:206637 27/104 (26%)
Cadherin_repeat 2802..2896 CDD:206637 15/112 (13%)
Blue background indicates that the domain is not in the aligned region.

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