Sequence 1: | NP_731930.3 | Gene: | Cad88C / 41774 | FlyBaseID: | FBgn0038247 | Length: | 1981 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_001345220.4 | Gene: | pcdh1a / 100006496 | ZFINID: | ZDB-GENE-091116-32 | Length: | 1190 | Species: | Danio rerio |
Alignment Length: | 1190 | Identity: | 275/1190 - (23%) |
---|---|---|---|
Similarity: | 419/1190 - (35%) | Gaps: | 341/1190 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 497 QIFIRDQNDNFPEFSQTIYNASVLENSEQDTIITHVQAVDVDSGDYGTMGIRYTNLRGGIA-HLL 560
Fly 561 NLNP----ITGVITIKQAGGT--------AFDREIISRHYLTVEAIDNAGQGNRNTAQIIVDILD 613
Fly 614 VNDNAPTFPQRQYETKLLENQAEFETPLQLEARDADLNGTENSQVTYEIVEGLYRSNFTIDPQSG 678
Fly 679 LLRPVHSFDFEELVDGSSRRSDPYTGGSFSIREIDLL---VRARDSGIPMLSTVVPVLIYVQDVN 740
Fly 741 DNAPIFQQSFYAKTVPEDLPGGSSVLQVTAIDRDGSAPNNVVVYRIQTGAGDKFIINSETGVISV 805
Fly 806 AHGANLDPDLTESKRSLYTLSVIALDGGLGNSQLMTTCTVNISIQDVNNKPPVLKEMPALQILEN 870
Fly 871 TPVGTLVYRIQATDLDHKAILRYKLNPEHCEGRTEEGALVKSSEYDF-LGAFEVDSIEGT----L 930
Fly 931 KVVKLLDRERVEHIKLAITVEDLAAAKGRQIAEGFLSIQVLDENDNNPKFRLPFYRQSITENSIN 995
Fly 996 GAMIVNVLASDVDK--NRTITYALEGNPTYRSLMHLDPQTGEIVVASKIDHEQHQWLNFSVRATD 1058
Fly 1059 SGIPARSSLVDVYITVLDENDNNPYFVGGSKNYTISENAAPGTRVATLQAGDADSGDFGKITFLM 1123
Fly 1124 DRISSQGKFTIDADTGVLTVADRLDRESKDSYNLVIEAWDNYQFGFLAGESRNAFKQVFISILDE 1188
Fly 1189 NDNPPEVDLPMSCVLITEYHELHERVASIVGKDA--------DDPTTPNGRLDFAITRGNKDGMF 1245
Fly 1246 ELRQIDAWNAQIFASKSL-RNRYGNYSLTITTRDMGLPANIVHNTLDICVSDFNDHAPVFVRPLH 1309
Fly 1310 NTTVRIPEN--ATVG----TLILQAYASDGDMGQNA------------------------LVRYR 1344
Fly 1345 LKPDPLGSYKMFEVDGSTGELFLKEQ-----LNREKQKIHEIRI-----EAYDQGLPTSLSSDLD 1399
Fly 1400 LTIYVRNVNDYEPQFMVNEISVNFTEHSDPGSERIKLPDTIDKDQLELDDPNDTPSQVCYFIVNG 1464
Fly 1465 NEAGYFRLDPETHILTVDRELDREVIANFTLYVRATENCRNDSISGGEKRRRMGIEINNRLGGIV 1529
Fly 1530 HNQQFGYDRFKHSRQLRSTESNEYGPEDAELLSYEAYDSSQED---------------------- 1572
Fly 1573 ------PTGGLA-TTHPELD 1585 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Cad88C | NP_731930.3 | Cadherin_repeat | 76..168 | CDD:206637 | |
Cadherin_repeat | 179..276 | CDD:206637 | |||
Cadherin_repeat | 287..388 | CDD:206637 | |||
Cadherin_repeat | 397..506 | CDD:206637 | 3/8 (38%) | ||
Cadherin_repeat | 514..617 | CDD:206637 | 26/115 (23%) | ||
Cadherin_repeat | 625..742 | CDD:206637 | 37/119 (31%) | ||
Cadherin_repeat | 751..853 | CDD:206637 | 10/101 (10%) | ||
Cadherin_repeat | 865..976 | CDD:206637 | 28/115 (24%) | ||
Cadherin_repeat | 985..1080 | CDD:206637 | 31/96 (32%) | ||
Cadherin_repeat | 1090..1191 | CDD:206637 | 27/100 (27%) | ||
CA | 1221..1302 | CDD:214520 | 21/89 (24%) | ||
Cadherin_repeat | 1312..1409 | CDD:206637 | 26/136 (19%) | ||
Cadherin_repeat | 1418..>1502 | CDD:206637 | 13/83 (16%) | ||
Cadherin_repeat | 1617..1710 | CDD:206637 | |||
pcdh1a | XP_001345220.4 | Cadherin_repeat | 27..127 | CDD:206637 | 3/8 (38%) |
Cadherin_repeat | 135..239 | CDD:206637 | 26/115 (23%) | ||
Cadherin_repeat | 247..346 | CDD:206637 | 37/119 (31%) | ||
Cadherin_repeat | 364..465 | CDD:206637 | 31/136 (23%) | ||
Cadherin_repeat | 474..571 | CDD:206637 | 31/96 (32%) | ||
Cadherin_repeat | 580..674 | CDD:206637 | 27/101 (27%) | ||
Cadherin_repeat | 693..775 | CDD:206637 | 23/99 (23%) | ||
Protocadherin | 778..986 | CDD:312022 | 44/258 (17%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |