DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad88C and pcdh1a

DIOPT Version :9

Sequence 1:NP_731930.3 Gene:Cad88C / 41774 FlyBaseID:FBgn0038247 Length:1981 Species:Drosophila melanogaster
Sequence 2:XP_001345220.4 Gene:pcdh1a / 100006496 ZFINID:ZDB-GENE-091116-32 Length:1190 Species:Danio rerio


Alignment Length:1190 Identity:275/1190 - (23%)
Similarity:419/1190 - (35%) Gaps:341/1190 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   497 QIFIRDQNDNFPEFSQTIYNASVLENSEQDTIITHVQAVDVDSGDYGTMGIRYTNLRGGIA-HLL 560
            :|.::|.|||.|:|...:...||.||:....:.:...|.|.|:.            |.|:| :.|
Zfish   118 RIEVQDINDN
TPQFPSPVLTLSVPENTHMGALFSIPLATDKDTE------------RNGVADYTL 170

  Fly   561 NLNP----ITGVITIKQAGGT--------AFDREIISRHYLTVEAIDNAGQGNRNTAQIIVDILD 613
            ...|    :.|:...:..|..        :.|||:...:.||::|:|.......::|.:.|.|.|
Zfish   171 TAGPEAVALFGLQVAEDRGEKLPQLIVLGSLDRELKDSYDLTIKAVDGGNPPRYSSALLRVVIAD 235

  Fly   614 VNDNAPTFPQRQYETKLLENQAEFETPLQLEARDADLNGTENSQVTYEIVEGLYRSNFTIDPQSG 678
            .|||||.|.:..||.::.||.....:.||::|.|:||.  .|.::.|.:.:       .|||...
Zfish   236 ANDN
APKFEKSSYEAEVAENSPIGHSVLQVKANDSDLG--PNGEIEYTLHQ-------AIDPVPK 291

  Fly   679 LLRPVHSFDFEELVDGSSRRSDPYTGGSFSIREIDLL---VRARDSGIPMLSTVVPVLIYVQDVN 740
            |||          :|.||  ...|..|.....||:.|   |.|||.|....|:...|.|.|.|.|
Zfish   292 LLR----------IDRSS--GIIYVKGPLDREEINNLKFYVVARDKGPSPKSSKTYVSIDVTDQN 344

  Fly   741 DNAPIFQQSFYAKTVPEDLPGGSSVLQVTAIDRDGSAPNNVVVYRIQTGAGDKFIINSETGVISV 805
            ||||                                    .|..|               |:..|
Zfish   345 DN
AP------------------------------------AVEIR---------------GIGLV 358

  Fly   806 AHGANLDPDLTESKRSLYTLSVIALDGGLGNSQLMTTCTVNISIQDVNNKPPVLKEMPALQILEN 870
            .|.                      ||           ..|||                    |:
Zfish   359 THS----------------------DG-----------VANIS--------------------ED 370

  Fly   871 TPVGTLVYRIQATDLDHKAILRYKLNPEHCEGRTEEGALVKSSEYDF-LGAFEVDSIEGT----L 930
            .||||.|..:|.:|.|              ||.......|.:.:..| |......|::..    |
Zfish   371 MPVGTAVALVQVSDKD--------------EGENAVVTCVVAGDVPFQLRPASDSSVDNKRKYFL 421

  Fly   931 KVVKLLDRERVEHIKLAITVEDLAAAKGRQIAEGFLSIQVLDENDNNPKFRLPFYRQSITENSIN 995
            :....||.|||...::.|...|  :......:...|.:||.|.|||:|.|....:.....|.:..
Zfish   422 QTTTPLDYERVRDYRVEIVAVD--SGNPALSSTNSLKVQVTDTNDNSPIFSPTLFEVEFAEENQP 484

  Fly   996 GAMIVNVLASDVDK--NRTITYALEGNPTYRSLMHLDPQTGEIVVASKIDHEQHQWLNFSVRATD 1058
            |..:|.|:|||.|.  |..:.|::..:.:.|.|..:||.:||:...|..|.|......|.|.|.|
Zfish   485 GEKVVEVVASDADSGTNAELVYSIIADSSTRGLFEIDPNSGEVRARSPFDREHKDRYEFRVTAAD 549

  Fly  1059 SGIPARSSLVDVYITVLDENDNNPYFVGGSKNYTISENAAPGTRVATLQAGDADSGDFGKITFLM 1123
            .|:|:......|.|.|||.|||:|.|:....::::.||..|.:.|..:...|.|.|:..::...:
Zfish   550 KGVPSHRGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVQDMDEGENAQVQLSV 614

  Fly  1124 DRISSQGKFTIDADTGVLTVADRLDRESKDSYNLVIEAWDNYQFGFLAGESRNAFKQVFISILDE 1188
            :  ...|||.|...||.:..:...|||.:.||...::|.|.      ....|:::..|.|::|||
Zfish   615 E--PDVGKFVIQNGTGTILSSISFDREKESSYTFRLKAVDG------GDPPRSSYVGVTINVLDE 671

  Fly  1189 NDNPPEVDLPMSCVLITEYHELHERVASIVGKDA--------DDPTTPNGRLDFAITRGNKDGMF 1245
            |||.|.|..|.:...|        |::.:...|:        |..:..|..|.::|..||...:|
Zfish   672 NDNAPVVTKPSNSSFI--------RLSPMAAPDSVVEVVEAEDIDSGSNAELVYSIAGGNPHDLF 728

  Fly  1246 ELRQIDAWNAQIFASKSL-RNRYGNYSLTITTRDMGLPANIVHNTLDICVSDFNDHAPVFVRPLH 1309
               .|...|.:|..:|.| |...|.:.|.|...|.|.|:.               ||...|....
Zfish   729 ---YISPSNGEITLTKELTRKHSGLHRLVIKVSDRGKPSR---------------HAIALVHIYV 775

  Fly  1310 NTTVRIPEN--ATVG----TLILQAYASDGDMGQNA------------------------LVRYR 1344
            |.|:....:  |.||    |.:....|.|.|.|..|                        .:|:|
Zfish   776 NETIANVSHVEALVGHSLYTPLDMDIAGDPDYGLAAQRSNIVYGSLAGVAGVVTVIVVVVFIRHR 840

  Fly  1345 LKPDPLGSYKMFEVDGSTGELFLKEQ-----LNREKQKIHEIRI-----EAYDQGLPTSLSSDLD 1399
            |:.:....|:..:.:  |.:|:..:|     ..|:.:|....:.     |..:..|..||..:||
Zfish   841 LQRETKSGYQAGKKE--TKDLYAPKQGPKSGKGRKGKKGKPPKSPKPLGEDEEVSLQKSLKFNLD 903

  Fly  1400 LTIYVRNVNDYEPQFMVNEISVNFTEHSDPGSERIKLPDTIDKDQLELDDPNDTPSQVCYFIVNG 1464
                  .|||                     |.||.||         |..|..:|....::..| 
Zfish   904 ------GVND---------------------SPRIHLP---------LTYPPGSPDLGRHYRSN- 931

  Fly  1465 NEAGYFRLDPETHILTVDRELDREVIANFTLYVRATENCRNDSISGGEKRRRMGIEINNRLGGIV 1529
            :.....:|..::...:...:..:|:.|..|......:    |:.:|.::......:.|       
Zfish   932 SPLPSIQLQAQSPSASQKHQAVQELPAANTFVGTGGD----DNSTGSDQYSDYSYKTN------- 985

  Fly  1530 HNQQFGYDRFKHSRQLRSTESNEYGPEDAELLSYEAYDSSQED---------------------- 1572
             ..::......|.|...||.:.....:|:...||  |||..|:                      
Zfish   986 -QPKYSTKTLPHRRVTFSTANPMQDQQDSSQQSY--YDSGLEESETPSSKSSSGPRIGPLALPED 1047

  Fly  1573 ------PTGGLA-TTHPELD 1585
                  |.|.:. ..|||.|
Zfish  1048 HYERTTPDGSIGEMEHPETD 1067

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad88CNP_731930.3 Cadherin_repeat 76..168 CDD:206637
Cadherin_repeat 179..276 CDD:206637
Cadherin_repeat 287..388 CDD:206637
Cadherin_repeat 397..506 CDD:206637 3/8 (38%)
Cadherin_repeat 514..617 CDD:206637 26/115 (23%)
Cadherin_repeat 625..742 CDD:206637 37/119 (31%)
Cadherin_repeat 751..853 CDD:206637 10/101 (10%)
Cadherin_repeat 865..976 CDD:206637 28/115 (24%)
Cadherin_repeat 985..1080 CDD:206637 31/96 (32%)
Cadherin_repeat 1090..1191 CDD:206637 27/100 (27%)
CA 1221..1302 CDD:214520 21/89 (24%)
Cadherin_repeat 1312..1409 CDD:206637 26/136 (19%)
Cadherin_repeat 1418..>1502 CDD:206637 13/83 (16%)
Cadherin_repeat 1617..1710 CDD:206637
pcdh1aXP_001345220.4 Cadherin_repeat 27..127 CDD:206637 3/8 (38%)
Cadherin_repeat 135..239 CDD:206637 26/115 (23%)
Cadherin_repeat 247..346 CDD:206637 37/119 (31%)
Cadherin_repeat 364..465 CDD:206637 31/136 (23%)
Cadherin_repeat 474..571 CDD:206637 31/96 (32%)
Cadherin_repeat 580..674 CDD:206637 27/101 (27%)
Cadherin_repeat 693..775 CDD:206637 23/99 (23%)
Protocadherin 778..986 CDD:312022 44/258 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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