DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment put and Tgfbr2

DIOPT Version :9

Sequence 1:NP_001262575.1 Gene:put / 41772 FlyBaseID:FBgn0003169 Length:520 Species:Drosophila melanogaster
Sequence 2:XP_008764912.1 Gene:Tgfbr2 / 81810 RGDID:69651 Length:592 Species:Rattus norvegicus


Alignment Length:501 Identity:171/501 - (34%)
Similarity:251/501 - (50%) Gaps:84/501 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 CNTTQQCETRIEHCKMEADKFPSCYVLWSVNETTGIL-------RIKMKGCFTDMHECNQTECVT 101
            |:.|..||...|          .|..:|..|:....|       :....| || :.:.....||.
  Rat    96 CSVTSICEKPQE----------VCVAVWRKNDKNITLETVCHDPKFTYHG-FT-LEDATSPTCVM 148

  Fly   102 SAEPRQGNIHF-CCCKGSRCNSNQKYIKSTTEATTQVPKEKTQDGSNLIYIYI---GTSVFSVLM 162
            ..:.|.|...| |.|....||.   ||....|.||..|        :|:.:.|   |.|:...|.
  Rat   149 KEKKRAGETFFMCSCNTEECND---YIIFNEEYTTSSP--------DLLLVIIQVTGVSLLPPLG 202

  Fly   163 VIVGMGLLLY-----------------RRRKQAHFNE-------------IPTHEAEITNSSPLL 197
            :.:.:..:.|                 :.||...|::             ..|....|.:::.||
  Rat   203 IAIAVIAIFYCYRVHRQQKLSPSWESSKPRKLMDFSDNCAIILEDDRSDISSTCANNINHNTELL 267

  Fly   198 SNRPIQLLEQKASGRFGDVWQAKLNN------QDVAVKIFRMQEKESWTTEHDIYKLPRMRHPNI 256
               ||:|......|||.:|::|||..      :.||||||..:|..||.||.||:....::|.||
  Rat   268 ---PIELDTLVGKGRFAEVYKAKLKQNTSEQFETVAVKIFPYEEYSSWKTEKDIFSDINLKHENI 329

  Fly   257 LEFLGVEK---HMDKPEYWLISTYQHNGSLCDYLKSHTISWPELCRIAESMANGLAHLH-EEIPA 317
            |:||..|:   .|.| :||||:.:...|:|.:||..|.|||.:|.::..|:|.|:|||| :..|.
  Rat   330 LQFLTAEERKTEMGK-QYWLITAFHAKGNLQEYLTRHVISWEDLRKLGSSLARGIAHLHSDHTPC 393

  Fly   318 SKTDGLKPSIAHRDFKSKNVLLKSDLTACIADFGLAMIFQPGKPCGD--THGQVGTRRYMAPEVL 380
            .:.   |..|.|||.||.|:|:|:|||.|:.||||::...|.....|  ..|||||.||||||||
  Rat   394 GRP---KMPIVHRDLKSSNILVKNDLTCCLCDFGLSLRLDPTLSVDDLANSGQVGTARYMAPEVL 455

  Fly   381 EGAINF-NRDAFLRIDVYACGLVLWEMVSRCDFAGPVGEFQLPFEAELGLRPSLDEVQESVVMKK 444
            |..:|. |.::|.:.|||:..||||||.|||:..|.|.:::.||.:::...|.::.::::|:..:
  Rat   456 ESRMNLENMESFKQTDVYSMALVLWEMTSRCNAVGEVKDYEPPFGSKVREHPCVESMKDNVLRDR 520

  Fly   445 LRPRLLNSWRAHPGLNVFCDTMEECWDHDAEARLSSSCVMERFAQL 490
            .||.:.:.|..|.|:.:.|:|:.||||||.||||::.||.|||::|
  Rat   521 GRPEIPSFWLNHQGIQIVCETLTECWDHDPEARLTAQCVAERFSEL 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
putNP_001262575.1 Activin_recp 38..126 CDD:279413 21/89 (24%)
STKc_ACVR2 206..493 CDD:270955 128/298 (43%)
S_TKc 210..479 CDD:214567 121/281 (43%)
Tgfbr2XP_008764912.1 ecTbetaR2 74..177 CDD:286061 23/95 (24%)
STYKc 269..566 CDD:214568 129/300 (43%)
STKc_TGFbR2_like 273..567 CDD:270957 128/298 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG3653
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23255
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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