DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde6 and pde5a

DIOPT Version :10

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_012821480.2 Gene:pde5a / 780273 XenbaseID:XB-GENE-479676 Length:943 Species:Xenopus tropicalis


Alignment Length:985 Identity:388/985 - (39%)
Similarity:534/985 - (54%) Gaps:166/985 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 AASPVEMSTTSSSSAATTSASSSKPLTNGANKTAISTAAGGVTPGAVPGPGSGAIPASSSSGNQV 75
            ||:| ||..|........:|:.|..:.:..|..|..|....|  .|........||||...|   
 Frog    84 AAAP-EMGDTPEPQVENWAATHSATVNSSCNAHACCTLQEMV--NAWFAERVHTIPASKEQG--- 142

  Fly    76 KLEHHHRQSNNNRPAVTNRSSETKLMTPTGSSSSPSQSPSQTQASIQTQTSQQDRLAKASTTASQ 140
                     .||                  |.|:|       |......|:|...:.|.|  ||:
 Frog   143 ---------KNN------------------SESNP-------QVCYSENTTQGTPVRKIS--ASE 171

  Fly   141 QDVDEVARLFEEKPEAFEKWLTERAPPEALSRLQEFIENRKPHKRPSVTSDLFQQWMAASPTVQQ 205
                            |::.|......:::..|:...::.|....|                   
 Frog   172 ----------------FDRPLRPIVVKDSVGTLKFLSDSEKKELMP------------------- 201

  Fly   206 KSPRSLSNSSASSLPECRRHLMDLDEGELFMELIRDVANELDIDVLCHKILVNVGLLTHADRGSL 270
            ..|.|||.:.    .:|.|          .:||::|:::.||:..|||||.:::..|..|||.||
 Frog   202 LQPPSLSRAG----DQCSR----------LLELVKDISSHLDVTTLCHKIFLHIHELIAADRYSL 252

  Fly   271 FL-AKGTPTNKYLVAKLFDVTQKTALKDAVTRASAEEIIIPFGIGIAGMVAQTKQMINIKEAYKD 334
            || .:.:...|:||::||||.:.|    .|.:||...|.:.:..||.|.||:..|.:|||:||:|
 Frog   253 FLVCEDSSNKKFLVSRLFDVAEGT----TVEQASNNCIRLEWNKGIVGHVAEFGQPLNIKDAYQD 313

  Fly   335 ARFNCEIDLKTGYKTNAILCMPICNYEGDIIGVAQIINKTNGCM-EFDEHDVEIFRRYLTFCGIG 398
            :|||.|:|..|||||.:||||||.|:..:::||||.|||.:|.. .|.:.|.:.|..||.||||.
 Frog   314 SRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGSNGTFTDQDEKDFAAYLAFCGIV 378

  Fly   399 IQNAQLFEMSVQEYRRNQILLNLARSIFEEQNNLECLVTKIMTEARELLKCERCSVFLVDLDC-- 461
            :.||||:|.|:.|.||||:||:||..|||||.:||.::.||.......::.:||::|:||.|.  
 Frog   379 LHNAQLYETSLLENRRNQVLLDLATLIFEEQQSLEVILKKIAATILSFMQAQRCTIFIVDEDSPD 443

  Fly   462 -------CEASHLEKIIEKPNQPATRAIKSADSFEEKKMRNRFTVLFELGGEYQAANVSRPSVSE 519
                   .|:..||              :|||:.:.               ||..:.::      
 Frog   444 TFSSVFHMESDELE--------------ESADAVKR---------------EYDVSKMN------ 473

  Fly   520 LSSSTLAQIAQFVATTGQTVNICDVIE-----WVRDHNQIRAEDEIDSTQAILCMPIMNAQK-KV 578
                  ...||:||.|.:.:||.|:.:     |...:.    |......|::||.||.||:| ||
 Frog   474 ------YMYAQYVANTMEAINIPDICKDTRFPWTNGNE----EKNFKHIQSLLCSPIKNAKKNKV 528

  Fly   579 IGVAQLINKANG-----VPFTDSDASIFEAFAIFCGLGIHNTQMYENACKLMAKQKVALECLSYH 638
            |||.||:||.:.     ..|..:|....|||||||||||.||||:|...:.||||.|.||.||||
 Frog   529 IGVCQLVNKVDENSGKIKAFNKNDEQFLEAFAIFCGLGIQNTQMFEVVERAMAKQMVTLEILSYH 593

  Fly   639 ATASQDQTEKL---TQDVIAEAESYNLYSFTFTDFELVDDDTCRAVLRMFMQCNLVSQFQIPYDV 700
            |:|::::|.:|   ...::..|:|..|..|.|:||||.|.:|..|..|||...|||..||:.|:.
 Frog   594 ASAAEEETMELQVTAGAIVPSAQSLKLTEFYFSDFELSDMETTLATSRMFTDLNLVQTFQMKYET 658

  Fly   701 LCRWVLSVRKNYRP-VKYHNWRHALNVAQTMFAMLKTGKMERFMTDLEILGLLVACLCHDLDHRG 764
            ||||:|||:||||. |.|||||||.|.||.|||.|:|||::..:.|||||.|::|.|.|||||||
 Frog   659 LCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALRTGKIQGKLNDLEILALMIATLSHDLDHRG 723

  Fly   765 TNNAFQTKTESPLAILYTTSTMEHHHFDQCVMILNSEGNNIFQALSPEDYRSVMKTVESAILSTD 829
            .||:|..::|.|||.||..|.||:||||||:|||||:||.|...||.:||::|:|.::.|||:||
 Frog   724 VNNSFIQRSEHPLAQLYCHSIMENHHFDQCLMILNSQGNQILSGLSVQDYKTVLKMIKQAILATD 788

  Fly   830 LAMYFKKRNAFLELVENGEFDWQGEEKKDLLCGMMMTACDVSAIAKPWEVQHKVAKLVADEFFDQ 894
            ||:|.|:|:.|.|||...:|.|....:|:|...|:|||||:|||.|||.||.::|:|||.||:||
 Frog   789 LALYIKRRSDFFELVNKKKFKWDDPSQKELFLAMLMTACDLSAITKPWPVQQRIAELVASEFYDQ 853

  Fly   895 GDLEKLQLNTQPVAMMDRERKDELPKMQVGFIDVICLPLYRVLCDTFPWITPLYEGTLENRRNWQ 959
            ||.|:.:||.:|:.:|:||:||::|.|||||||.:||.||..|........||.:|...||:.||
 Frog   854 GDKERRELNIEPIDLMNREKKDKIPSMQVGFIDAVCLELYEALTQISESCYPLLDGCQRNRQMWQ 918

  Fly   960 DLAEKVEMGL 969
            .|||:.|..|
 Frog   919 ILAEQQEKNL 928

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500 76/160 (48%)
GAF 431..619 CDD:214500 62/207 (30%)
PDEase_I 717..950 CDD:459723 130/232 (56%)
pde5aXP_012821480.2 GAF 229..386 CDD:214500 76/160 (48%)
GAF 412..577 CDD:214500 63/209 (30%)
PDEase_I 676..910 CDD:459723 130/233 (56%)

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