DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde6 and pde2a

DIOPT Version :9

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_031751996.1 Gene:pde2a / 780063 XenbaseID:XB-GENE-5945995 Length:964 Species:Xenopus tropicalis


Alignment Length:987 Identity:283/987 - (28%)
Similarity:450/987 - (45%) Gaps:163/987 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 PAVTNRSSETKLMTPTG------SSSSPSQSPSQTQASIQTQTSQQD--RLAKASTTASQQDVDE 145
            |||.:........:..|      :..|||......|.::.|..|..|  ||..|..       |.
 Frog    22 PAVASSKMRASSFSRRGQQGFLKAEDSPSLGSEALQDALLTLGSIIDIPRLRDAIR-------DA 79

  Fly   146 VARLFEEKPEAF------EKWLTERAPPEAL---SRLQEFIENRKPHKRPSVT-SDLFQQWMAA- 199
            :|.:..:...||      |..|....||..|   .:|::.:..:|..:...:| |:|..|.|:: 
 Frog    80 IASVLPKVDNAFIYLLDAEGRLVCDDPPHELPPEGKLRDAVLLQKRIECSGLTPSELLGQQMSSL 144

  Fly   200 ------------SPTVQQKSPR----------SLSNSSASSLPECRRHLMDLDEGELFMELIR-- 240
                        .|.:.|.:.|          .||:|...:|....:|.:...:..|.::.::  
 Frog   145 AAPLPPDKQVLILPLLDQDTARVVSVILLHCSQLSDSDEQNLRTLEKHTLVACKRVLAIQKLQPS 209

  Fly   241 ---------------------DVANELDIDVLCHKILVNVGLLTHADRGSL------FLAKGTPT 278
                                 ..||| ..|.|..|||...|.|...|..||      :|.:.|.:
 Frog   210 PQVPPSPLSPRTYQNSLPKPSPTANE-SYDELDRKILQLCGELYDLDAASLQIKVIHYLEQQTQS 273

  Fly   279 NKYLVAKLFDVTQKTALKDAVTRASAEEIIIPFGIGIAGMVAQTKQMINIKEAYKDARFNCEIDL 343
            ....:..:.:.:.:...:....:...|||..|...|..|.|...|:.|.:::...:.  :.:::.
 Frog   274 PCCCLLLVSEDSHQLFCQVVGGKVLEEEISFPLTFGHLGQVVDKKKSITLQDISSEE--HRQLNN 336

  Fly   344 KTGYKTNAILCMP-ICNYEGDIIGVAQIINKTNG-CMEFDEHDVEIFRRYLTFC--------GIG 398
            ..|::.:::||:| |......::.:|...||..| ..|.|||.::     ..||        .:.
 Frog   337 MLGFEVHSMLCVPVISRATSQVVALACAFNKQGGKYTEVDEHKIQ-----HCFCYTSTVLTSTLA 396

  Fly   399 IQNAQLFEMSVQEYRRNQILLNLARSIFEEQNNLECLVTKIMTEARELLKCERCSVFLVDLDCCE 463
            .|..|..:...      |.||.:|:::|...:::..|:.:|:||||.|...|.|||||::    .
 Frog   397 FQKEQKLKCEC------QALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLE----R 451

  Fly   464 ASHLEKIIEKPNQPATRAIKSADSFEEKKMRNRFTVLFELGGEYQAANVSRPSVSELSSSTLAQI 528
            .||  :::.|                          :|: ||      |......|:.......|
 Frog   452 QSH--ELVAK--------------------------VFD-GG------VVDDESYEIRIPADQGI 481

  Fly   529 AQFVATTGQTVNICDV------IEWVRDHNQIRAEDEIDSTQAILCMPIMNAQKKVIGVAQLINK 587
            |..||||||.:||.|.      ...|.|....|       |:.|||.||.|...:|||||:|:||
 Frog   482 AGHVATTGQILNIKDAYSHPLFYRGVDDSTGFR-------TRNILCFPIKNESNEVIGVAELVNK 539

  Fly   588 ANGVPFTDSDASIFEAFAIFCGLGIHNTQMYENACKLMAKQKVALECLSYHATASQDQTEKLTQD 652
            .||..||..|..:..||:|:||:.|.::.:|:...:...:..:|.|.:.||....:|:|:||..:
 Frog   540 INGPGFTKFDEDLATAFSIYCGISIAHSLLYKQVREAQFRSHLANEMMMYHMKVCEDETKKLQSN 604

  Fly   653 VIAEAESYN--LYSFTFTDFELVDDDTCRAVLRMFMQCNLVSQFQIPYDVLCRWVLSVRKNYRPV 715
            .|......:  ..||::|...|.:|||...|:.||.....|:.::|....|.|:.|.|:|.||..
 Frog   605 GIVSVCQIDPGFASFSYTPRSLPEDDTVMCVISMFEDMGFVNNYKIDRTTLIRFCLMVKKGYRDP 669

  Fly   716 KYHNWRHALNVAQTMFAMLKTGKMERFMTDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAIL 780
            .||||.||.:|:...:.:.|..::..::..:||..|.|:|||||||||||||:||..::|.||.|
 Frog   670 PYHNWMHAFSVSHFCYLLFKNLELVNYLEYIEIFALFVSCLCHDLDHRGTNNSFQVASKSVLAAL 734

  Fly   781 YTT--STMEHHHFDQCVMILNSEGNNIFQALSPEDYRSVMKTVESAILSTDLAMYFKKRNAFLEL 843
            |::  |.||.|||.|.:.||||:|.||.:..|.:||:.::..:...||:||||.:.:.......:
 Frog   735 YSSEGSVMERHHFAQAIAILNSQGCNILEQFSRKDYQRMLDLMRDIILATDLAHHLRIFKELTRM 799

  Fly   844 VENGEFDWQGEEKKDLLCGMMMTACDVSAIAKPWEVQHKVAKLVADEFFDQGDLEKLQLNTQPVA 908
            .::| ||.|.:....||..::||:.|:|...|.|:...|:|:|:..|||.|||||| .:..:|..
 Frog   800 SQDG-FDPQNKHHHYLLICLLMTSSDLSDQTKGWKTTRKIAELIYKEFFSQGDLEK-AMGNRPSE 862

  Fly   909 MMDRERKDELPKMQVGFIDVICLPLYRVLCDTFPWITPLYEGTLENRRNWQDLAEKVEM-GLTWI 972
            ||||| |..:|::|:.|::.|.:|:|.:|.|.||....|||....||..|..::.|..: ||.  
 Frog   863 MMDRE-KAYIPELQISFMEHIAMPIYNLLKDLFPRSAELYERVATNREKWTRVSHKFTIRGLP-- 924

  Fly   973 DHDTIDKPVEEF 984
            .::::|...||:
 Frog   925 SNNSLDFLDEEY 936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500 38/174 (22%)
GAF 431..619 CDD:214500 61/193 (32%)
PDEase_I 717..950 CDD:278654 98/234 (42%)
pde2aXP_031751996.1 GAF 255..401 CDD:214500 30/152 (20%)
GAF 423..574 CDD:214500 62/196 (32%)
PDEase_I 671..904 CDD:395177 99/235 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D114875at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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